View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8882_high_8 (Length: 255)
Name: NF8882_high_8
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8882_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 41387081 - 41386837
Alignment:
| Q |
1 |
acattccttctcactgcattgaaagacaacaccaagtgcaattccaaacaattttnnnnnnnn---catgttaaattttctcaccattacttattacatc |
97 |
Q |
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| T |
41387081 |
acattccttctcagtgcattgaaagacaacaccaagtgcaattccaaacaatttaaaaaaaaaaaacatcttaaattttctcaccattacttattacatc |
41386982 |
T |
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| Q |
98 |
tatttctacacctcactaattattttcttacacttatcacactatttagattaccataacatgtttggcacattatatcacaatcacattatgtagaact |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
41386981 |
tatttctacacctcactaattattttcttacacttatcac--tatttagattaccataacatgtttggcacaatatatcacaatcacattatgtacaact |
41386884 |
T |
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| Q |
198 |
cttaaaagcaatttagatatttttgttttgttttggataacacgaaa |
244 |
Q |
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||| |||||||||||||||||||||||||||||| |||||| |||| |
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| T |
41386883 |
cttcaaagcaatttagatatttttgttttgttttaaataacatgaaa |
41386837 |
T |
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