View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8882_low_1 (Length: 666)

Name: NF8882_low_1
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8882_low_1
NF8882_low_1
[»] chr8 (1 HSPs)
chr8 (14-654)||(9422129-9422769)


Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 14 - 654
Target Start/End: Original strand, 9422129 - 9422769
Alignment:
Q  14 aattcctctacaaaacctagtacaacaacttcctcttcaatattcattcctggtccaaaagggtatcctctatttggaagcatgaatcttatgtcttcat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9422129 aattcctctacaaaacctagtacaacaacttcctcttcaatattcattcctggtccaaaagggtatcctctatttggaagcatgaatcttatgtcttcat 9422228  T
Q  114 cactagcacaccaccgtatagcttccacagcaaaaacatgcaaagcaacaagactcatggcttttagtcttggtgacacaagagccatagttacttgcaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9422229 cactagcacaccaccgtatagcttccacagcaaaaacatgcaaagcaacaagactcatggcttttagtcttggtgacacaagagccatggttacttgcaa 9422328  T
Q  214 tccagatgttgctaaagagattctccatagctctgtctttgctgatcgtcctatcaaagaatcagcttattctcttatgttcaaccgtgccataggattc 313  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9422329 tccagatgttgctaaagaaattctccatagctctgtctttgctgatcgtcctatcaaagaatcagcttattctcttatgttcaaccgtgccataggattc 9422428  T
Q  314 gcaccttacggtgtttattggcgaacccttagaaaaatttctactaatcatcttttctcacccatgcaaatcaaatcatctgggccgcagagaagtgaaa 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  9422429 gcaccttacggtgtttattggcgaacccttagaaaaatttctactaatcatcttttttcacccatgcaaatcaaatcatctgggccgcagaggagtgaaa 9422528  T
Q  414 ttgcgacccagatgattgacttgtttagaaaccgtcatctgcatggcggtttctgtgttcgagatgttttgaaaaaagcatcgcttaataacatgatgtg 513  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9422529 ttgcgacccagatgattgacttgttcagaaaccgtcatttgcatggcggtttctgtgttcgagatgttttgaaaaaagcatcgcttaataacatgatgtg 9422628  T
Q  514 ctctgtttttggacagaggtttaagattgatgaagttaatgagagaatgatggaacttagtgggttggttgaacaaggttatgatttgttgggtagtctt 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9422629 ctctgtttttggacagaggtttaagattgatgaagttaatgagagaatgatggaacttagtgggttggttgaacaaggttatgatttgttgggtggtctt 9422728  T
Q  614 aattggggtgatcatcttccatttttgaaagattttgatgt 654  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9422729 aattggggtgatcatcttccatttttgaaagattttgatgt 9422769  T

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