View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8882_low_11 (Length: 225)
Name: NF8882_low_11
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8882_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15607475 - 15607283
Alignment:
| Q |
16 |
atgaagtggctttgggaaggaacgatgttcagaatcagaataaaacaaaattcgagatataaactggaattaagtgatttttaccattggattgagtgaa |
115 |
Q |
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| T |
15607475 |
atgaagtggctttgggaaggaacaatgtacagaatcagaataaaacaaaattcgagttataaaccggaattaagtgatttttaccattggattgagtgaa |
15607376 |
T |
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| Q |
116 |
ccaataatggatttcgtcaatgagttttttagctttgaggtgagagtttttgctaccttgttggtaatccctgcacaacacatatcaccatgt |
208 |
Q |
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| T |
15607375 |
ccaataacggatttcgtcaatgagttttttagctttgaggtgagagtttttgccaccttgttggtaatccctgcatcacacatatcaccatgt |
15607283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15615820 - 15615628
Alignment:
| Q |
16 |
atgaagtggctttgggaaggaacgatgttcagaatcagaataaaacaaaattcgagatataaactggaattaagtgatttttaccattggattgagtgaa |
115 |
Q |
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| T |
15615820 |
atgaagtggctttgggaaggaacaatgtacagaatcagaataaaacaaaattcgagttataaaccggaattaagtgatttttaccattggattgagtgaa |
15615721 |
T |
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| Q |
116 |
ccaataatggatttcgtcaatgagttttttagctttgaggtgagagtttttgctaccttgttggtaatccctgcacaacacatatcaccatgt |
208 |
Q |
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| T |
15615720 |
ccaataacgtatttcgtcaatgagttttttagctttgaggtgagagtttttgccaccttgttggtaatccctgcatcacacatatcaccatgt |
15615628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15638994 - 15638803
Alignment:
| Q |
16 |
atgaagtggctttgggaaggaacgatgttcagaatcagaataaaacaaaattcgagatataaactggaattaagtgatttttaccattggattgagtgaa |
115 |
Q |
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| T |
15638994 |
atgaagtggctctgggaaggaacaatgtatagaatcagaataaaacaaa-ttcgagttataaactggaattaagtgatttttaccattggattgagtgaa |
15638896 |
T |
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| Q |
116 |
ccaataatggatttcgtcaatgagttttttagctttgaggtgagagtttttgctaccttgttggtaatccctgcacaacacatatcaccatgt |
208 |
Q |
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| T |
15638895 |
ccaataacggatttcgtcaatgagttttttagctttgaggtgagagtttttgccaccttgttggtaatccctgcatcacacatatcaccatgt |
15638803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 16672992 - 16673161
Alignment:
| Q |
16 |
atgaagtggctttgggaaggaacgat-gttcagaatcagaataaaacaaaattcgagatataaactggaattaagtgatttttaccattggattgagtga |
114 |
Q |
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| T |
16672992 |
atgaagtggctctgcgaaggaacgattgaatagaatcagaataaaacaaaattcgagttataaacgagaattaagtgatttttaccattggattgagtga |
16673091 |
T |
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| Q |
115 |
accaataatggatttcgtcaatgagttttttagctttgaggtgagagtttttgctaccttgttggtaatc |
184 |
Q |
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| T |
16673092 |
accaagaacggacgtcaccaatgagtttttcagctttgaggtgagagttttcgccaccttgttggtaatc |
16673161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 15626436 - 15626352
Alignment:
| Q |
100 |
cattggattgagtgaaccaataatggatttcgtcaatgagttttttagctttgaggtgagagtttttgctaccttgttggtaatc |
184 |
Q |
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| T |
15626436 |
cattggattgagtgaaccaagaacggatttcgttaatgagttttttagctttgaggtgagagtttttgccaccttgttggtaatc |
15626352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 15650193 - 15650109
Alignment:
| Q |
100 |
cattggattgagtgaaccaataatggatttcgtcaatgagttttttagctttgaggtgagagtttttgctaccttgttggtaatc |
184 |
Q |
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| T |
15650193 |
cattggattgaatgaaccaagaacggatttcgttaatgagttttttagctttgaggtgagagtttttgccaccttgttggtaatc |
15650109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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