View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8882_low_2 (Length: 492)
Name: NF8882_low_2
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8882_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 9 - 476
Target Start/End: Complemental strand, 3421036 - 3420573
Alignment:
| Q |
9 |
gagtttggtgtttatgcttcgtatgcaatgttaattcaagaattgaataaattcacgatcaccacaattgagaagttgtgtatgtatgtattctttacaa |
108 |
Q |
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| T |
3421036 |
gagtttggtgtttatgcttcgtatgcaatgttaattcaagaattgaataaattcacgatcaccacaattgagaagttgtgtatgtat----tctttacaa |
3420941 |
T |
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| Q |
109 |
atgagtatttttgtggtttacttattctccatgttcagaattgccatttatttattatgaagtataaacaaaattaaagtaagttagaaattaactaatt |
208 |
Q |
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| T |
3420940 |
atgagtatttttgtggtttacttattctccatgttcagaattgccatttatttattatgaagtataaacaaaattaaagtaagttagaaattaactaatt |
3420841 |
T |
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| Q |
209 |
gtttttggtactaattaaacatattactgatataaggtatggtcgtttttaaaactaatttcctgtaacatgttgcaggaatttatgcgcatgcttaaag |
308 |
Q |
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| T |
3420840 |
gtttttggtactaattaaacatattactgatataaggtatggtcgtttttaaaactaatttcctgtaacatgttgcaggaatttatgggcatgcttaaag |
3420741 |
T |
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| Q |
309 |
aagaaaatatttacgagaatattgaactgcttctaatttcttgagatgcctctgctaggaattgttgttatgtctctattgannnnnnncctataaataa |
408 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3420740 |
aataaaatatttacgagaatattgaactgcttctaatttcttgagatgcctctgctaggaattgttgttatgtctctattgattttttttctataaataa |
3420641 |
T |
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| Q |
409 |
tcaacttctctattattcagttctaacatctaagtatctaacacccctctcaagaaaaagattctaac |
476 |
Q |
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| T |
3420640 |
tcaacttctctattattcagttctaacatctaagtatctaacacccctctcaagaaaaagattctaac |
3420573 |
T |
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