View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8882_low_7 (Length: 333)

Name: NF8882_low_7
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8882_low_7
NF8882_low_7
[»] chr2 (3 HSPs)
chr2 (9-317)||(41387248-41387556)
chr2 (39-88)||(11530023-11530072)
chr2 (234-322)||(1263261-1263349)
[»] scaffold0015 (1 HSPs)
scaffold0015 (234-317)||(67010-67093)
[»] chr3 (1 HSPs)
chr3 (234-317)||(43647886-43647969)
[»] chr7 (2 HSPs)
chr7 (234-317)||(8688664-8688747)
chr7 (231-317)||(37051436-37051522)
[»] chr5 (1 HSPs)
chr5 (40-98)||(41399578-41399636)
[»] chr8 (1 HSPs)
chr8 (35-79)||(2722233-2722277)
[»] chr6 (1 HSPs)
chr6 (38-98)||(21869856-21869916)
[»] chr4 (1 HSPs)
chr4 (133-173)||(49363519-49363559)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 41387248 - 41387556
Alignment:
Q  9 ggtgtttgttaaataatagttatagcaatgtagcaaaatttgaacaaatcaatattgttttgtgatacactatctagtactaaatgttgttgttaaagag 108  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41387248 ggtgtttgttaaataatagttatagcaatgtagcgaaatttgaacaaatcaatattgttttgtgattcactatctagtactaaatgttgttgttaaagag 41387347  T
Q  109 ctgctatataagtcaataacactattgcatagaagaatttgaatgaactgctattttctgcaatcttcgattctcactttctactactttgctgtgaaac 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41387348 ctgctatataagtcaataaaactattgcatagaagaatttgaatgaactgctattttctgcaatcttcgattctcactttctactactttgctgtgaaac 41387447  T
Q  209 tattgcattgtgatttgcaacgtttaggctggatttgctggagatgatgctccaagggctgtgtttcctagcattgttggtcgaccacgccacaccggtg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41387448 tattgcattgtgatttgcaacgtttaggctggatttgctggagatgatgctccaagggctgtgtttcctagcattgttggtcgaccacgccacaccggtg 41387547  T
Q  309 tgatggttg 317  Q
    |||||||||    
T  41387548 tgatggttg 41387556  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 11530023 - 11530072
Alignment:
Q  39 tagcaaaatttgaacaaatcaatattgttttgtgatacactatctagtac 88  Q
    |||| |||||||||||||||| ||||||| || |||||||||| ||||||    
T  11530023 tagcgaaatttgaacaaatcactattgttctgcgatacactatttagtac 11530072  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 1263349 - 1263261
Alignment:
Q  234 aggctggatttgctggagatgatgctccaagggctgtgtttcctagcattgttggtcgaccacgccacaccggtgtgatggttgtgatg 322  Q
    ||||||| ||||| || ||||||||||| ||||| ||||| || || ||| |||| ||||| || || |||||||| ||||||| ||||    
T  1263349 aggctggttttgcaggcgatgatgctcctagggccgtgttccccagtattattgggcgacctcgtcataccggtgtaatggttgggatg 1263261  T

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Target: scaffold0015 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 67010 - 67093
Alignment:
Q  234 aggctggatttgctggagatgatgctccaagggctgtgtttcctagcattgttggtcgaccacgccacaccggtgtgatggttg 317  Q
    ||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  67010 aggctggatttgccggagatgatgcaccaagggcggtgttccctagtattgtaggtcgaccacgccacaccggtgtgatggttg 67093  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 43647969 - 43647886
Alignment:
Q  234 aggctggatttgctggagatgatgctccaagggctgtgtttcctagcattgttggtcgaccacgccacaccggtgtgatggttg 317  Q
    |||||||||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || || |||||||| |||||||    
T  43647969 aggctggatttgctggtgatgatgctcctagggctgtgtttccaagtattgttggccgacctcgtcataccggtgtcatggttg 43647886  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 8688664 - 8688747
Alignment:
Q  234 aggctggatttgctggagatgatgctccaagggctgtgtttcctagcattgttggtcgaccacgccacaccggtgtgatggttg 317  Q
    ||||||||||||||||||||||||| ||  | ||||||||||| |||||||| ||||| || || ||||| |||||||||||||    
T  8688664 aggctggatttgctggagatgatgcccctcgtgctgtgtttcccagcattgtaggtcgtcctcgtcacactggtgtgatggttg 8688747  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 37051522 - 37051436
Alignment:
Q  231 tttaggctggatttgctggagatgatgctccaagggctgtgtttcctagcattgttggtcgaccacgccacaccggtgtgatggttg 317  Q
    |||||||||| ||||| ||||||||||| |||||||| || || |||||||| || || || ||||| ||||| || || |||||||    
T  37051522 tttaggctggttttgcaggagatgatgcaccaagggcagtattccctagcatagtaggacgtccacgtcacacaggggtaatggttg 37051436  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 41399636 - 41399578
Alignment:
Q  40 agcaaaatttgaacaaatcaatattgttttgtgatacactatctagtactaaatgttgt 98  Q
    ||||||||||||| |||||||||||||   |||||||||||| |||||| |||||||||    
T  41399636 agcaaaatttgaataaatcaatattgtgccgtgatacactatttagtacaaaatgttgt 41399578  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 2722277 - 2722233
Alignment:
Q  35 aatgtagcaaaatttgaacaaatcaatattgttttgtgatacact 79  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||    
T  2722277 aatgtagcaaaatttaaacaaatgaatattgttatgtgatacact 2722233  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 21869856 - 21869916
Alignment:
Q  38 gtagcaaaatttgaacaaatcaatattgttttgtgatacactatctagtactaaatgttgt 98  Q
    |||||| |||| |||||||||| |||||||  |||||||||||| |||||| |||||||||    
T  21869856 gtagcagaattcgaacaaatcattattgttccgtgatacactatttagtacaaaatgttgt 21869916  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 49363519 - 49363559
Alignment:
Q  133 ttgcatagaagaatttgaatgaactgctattttctgcaatc 173  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  49363519 ttgcattgcagaatttggatgaactgctattttctgcaatc 49363559  T

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