View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8882_low_8 (Length: 320)
Name: NF8882_low_8
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8882_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 13336244 - 13336088
Alignment:
| Q |
13 |
gtttggagttggagagaaaggcgggagtagaggacacagactaagagagggaggagtacgacggagattacgggaagggatggatggtgagaggaaggag |
112 |
Q |
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| T |
13336244 |
gtttggagttggagagaaaggcgggagtagatgacacagactcagagagggaggagtacggcggagattatgggaagggatggatggtgagaggaaggag |
13336145 |
T |
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| Q |
113 |
tacgacggagacggagatatgaacagaaaaagtggaacttgggtcttgctgtgatta |
169 |
Q |
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| T |
13336144 |
tacgacggagacggagatatgaacagaaaaagtggaacttgggtcttgctgtgatta |
13336088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 13336025 - 13335984
Alignment:
| Q |
232 |
aaaattaacaacattcacagctacaaaacatcaacaccatta |
273 |
Q |
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| T |
13336025 |
aaaattaacaacattcacagctacaaaacatcaacaccatta |
13335984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 32736002 - 32736063
Alignment:
| Q |
24 |
gagagaaaggcgggagtagaggacacagactaagagagggaggagtacgacggagattacgg |
85 |
Q |
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| T |
32736002 |
gagagagaggcgggagtagaggagagagacggagagaaggaggaggacggcggagattacgg |
32736063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 4462830 - 4462674
Alignment:
| Q |
13 |
gtttggagttggagagaaaggcgggagtagaggacacagactaagagagggaggagtacgacggagattacgggaagggatggatggtgagaggaaggag |
112 |
Q |
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| T |
4462830 |
gtttggagttggagagaaaggcgggagtagaggacacagactcagagagggaggagtatggcggagattacgggaaggaatggatggtgagagggaggag |
4462731 |
T |
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| Q |
113 |
tacgacggagacggagatatgaacagaaaaagtggaacttgggtcttgctgtgatta |
169 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4462730 |
tacgacggagacggagatatgaacagaaaaagaggaacttgggtcttgctgtgatta |
4462674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 4462611 - 4462540
Alignment:
| Q |
232 |
aaaattaacaacattcacagctacaaaacatcaacaccattaaacctaataactgtcaaatttgaaatttct |
303 |
Q |
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| T |
4462611 |
aaaattaacaacattcacagctacaaaacatcaacaccattaaacctaataactgtcaaatttgaaatttct |
4462540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 36381055 - 36381126
Alignment:
| Q |
232 |
aaaattaacaacattcacagctacaaaacatcaacaccattaaacctaataactgtcaaatttgaaatttct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36381055 |
aaaattaacaacattcacagctacaaaacatcaacaccattaaacctaataactgtcaaatttgaaatttct |
36381126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 36380884 - 36380992
Alignment:
| Q |
65 |
ggagtacgacggagattacgggaagggatggatggtgagaggaaggagtacgacggagacggagatatgaacagaaaaagtggaacttggg----tcttg |
160 |
Q |
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|||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |
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| T |
36380884 |
ggagtacggtggagattacgagaagggatggatgttgagagggaggagtacgacggagacggagatatgaacagaaaaggaggaacttgggtgggtcttg |
36380983 |
T |
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| Q |
161 |
ctgtgatta |
169 |
Q |
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||||||||| |
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| T |
36380984 |
ctgtgatta |
36380992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 36380861 - 36380889
Alignment:
| Q |
13 |
gtttggagttggagagaaaggcgggagta |
41 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36380861 |
gtttggagttggagagaaaggcgggagta |
36380889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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