View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8882_low_9 (Length: 302)
Name: NF8882_low_9
Description: NF8882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8882_low_9 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 16729291 - 16729016
Alignment:
| Q |
11 |
gtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttattatggttgaattagaaaac |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |
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| T |
16729291 |
gtggtggtgaaatcgtttctctcattcttctctggttagatcttcattcccttcttttacatttccattctctctctttattatggttgaattagataac |
16729192 |
T |
|
| Q |
111 |
ctagaaattgaattgtaaaccactt-atttagctcggtgtttttgaaagcacgacggagggagcgaagggttgagagaaaggagagagtagtgaagagag |
209 |
Q |
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|||||||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16729191 |
ctagaaattgaattctaaaccacatgatttagctccgtgtttttgaaatcacgacggagggagcgaaggaatgagagaaaggagagagtagtgaagagag |
16729092 |
T |
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| Q |
210 |
tgaaaacgggggcgtttggggaggaaggagaggaagacgtgagaagctaggagagagtgaggtggtggagatgaat |
285 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16729091 |
tgaaaacggggtcgtttggggaggaaggagaggaagacgtgagaagcaaggagagagtgaggtggtggagatgaat |
16729016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 20512400 - 20512465
Alignment:
| Q |
27 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
92 |
Q |
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||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
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| T |
20512400 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
20512465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 49946682 - 49946407
Alignment:
| Q |
11 |
gtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttattatggttgaattagaaaac |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |
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| T |
49946682 |
gtggtggtgaaatcgtttctctcattcttctctggttagatcttcattcccttcttttacatttccattttctctctttattatggttgaattagataac |
49946583 |
T |
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| Q |
111 |
ctagaaattgaattgtaaaccactt-atttagctcggtgtttttgaaagcacgacggagggagcgaagggttgagagaaaggagagagtagtgaagagag |
209 |
Q |
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|||||||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49946582 |
ctagaaattgaattctaaaccacatgatttagctccgtgtttttgaaatcacgacggagggagcgaaggaatgagagaaaggagagagtagtgaagagag |
49946483 |
T |
|
| Q |
210 |
tgaaaacgggggcgtttggggaggaaggagaggaagacgtgagaagctaggagagagtgaggtggtggagatgaat |
285 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49946482 |
tgaaaacgggggcgtttggggaggaaggagatgaagacgtgagaagcgaggagagagtgaggtggtggagatgaat |
49946407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 146 - 285
Target Start/End: Original strand, 14240057 - 14240201
Alignment:
| Q |
146 |
gtgtttttgaaagcacgacggagggagcgaagggttgagagaaaggagagagtagtgaagagagtgaaaacgggggcgtttgg-----ggaggaaggaga |
240 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14240057 |
gtgtttttgaaagcacgacggagggagcgaaggaatgagagaaaggagagaggagtgaagagagtgaaaacgggggcgtttggggagaggaggaaggaga |
14240156 |
T |
|
| Q |
241 |
ggaagacgtgagaagctaggagagagtgaggtggtggagatgaat |
285 |
Q |
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| T |
14240157 |
ggaagacgtgagaagcgaggagagagtgaggtggtggagatgaat |
14240201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 17009536 - 17009427
Alignment:
| Q |
11 |
gtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttattatggttgaattagaaaac |
110 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
17009536 |
gtggtggtgaaaatgtttctctctttcttctctggttagatcttcattcccttcttttacacttccattctctctctttattatggttgaattagataac |
17009437 |
T |
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| Q |
111 |
ctagaaattg |
120 |
Q |
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|||| ||||| |
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| T |
17009436 |
ctaggaattg |
17009427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 20028247 - 20028312
Alignment:
| Q |
27 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
92 |
Q |
| |
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||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| |
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| T |
20028247 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctctctttatt |
20028312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 24501239 - 24501174
Alignment:
| Q |
11 |
gtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttcc |
76 |
Q |
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|||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24501239 |
gtggtggtgaaaacgtttctctctttcttctctggttagatcttcattcccttcttttacacttcc |
24501174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 13371431 - 13371366
Alignment:
| Q |
27 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
92 |
Q |
| |
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||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
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| T |
13371431 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
13371366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 33391 - 33448
Alignment:
| Q |
35 |
ttcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
92 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
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| T |
33391 |
ttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
33448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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