View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8883_high_10 (Length: 246)
Name: NF8883_high_10
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38447973 - 38447754
Alignment:
| Q |
1 |
tgatctatcaaataaggttgtttagacaaaacattcatgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaaacaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38447973 |
tgatatatcaaataaggttgtttagacaaaacattcgtgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaa---- |
38447878 |
T |
|
| Q |
101 |
aagatctggataactcatagtcaaaccaaataaccgtataagtaattctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38447877 |
--------gataactcatagtcaaaccaaataaccgtataagtaatcctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgcct |
38447786 |
T |
|
| Q |
201 |
tcttccagttatttatctctgacatctgatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38447785 |
tcttccagttatttatctctgacatctgatgt |
38447754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 38550296 - 38550515
Alignment:
| Q |
1 |
tgatctatcaaataaggttgtttagacaaaacattcatgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaaacaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38550296 |
tgatatatcaaataaggttgtttagacaaaacattcgtgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaa---- |
38550391 |
T |
|
| Q |
101 |
aagatctggataactcatagtcaaaccaaataaccgtataagtaattctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38550392 |
--------gataactcatagtcaaaccaaataaccgtataagtaatcctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgcct |
38550483 |
T |
|
| Q |
201 |
tcttccagttatttatctctgacatctgatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38550484 |
tcttccagttatttatctctgacatctgatgt |
38550515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 55780735 - 55780778
Alignment:
| Q |
1 |
tgatctatcaaataaggttgtttagacaaaacattcatgataca |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55780735 |
tgatctatcaaataaggttgtttagacaaaacattcatgataca |
55780778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 55844915 - 55844958
Alignment:
| Q |
1 |
tgatctatcaaataaggttgtttagacaaaacattcatgataca |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55844915 |
tgatctatcaaataaggttgtttagacaaaacattcatgataca |
55844958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 38448399 - 38448347
Alignment:
| Q |
59 |
gaatgccatgcaggtgtctaatggcatcattgtgtcaaacaaaagatctggat |
111 |
Q |
| |
|
|||||||||| |||| ||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
38448399 |
gaatgccatgtaggtttctaatgacatcgttgtgttgaacaaaagatctggat |
38448347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University