View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8883_high_11 (Length: 240)
Name: NF8883_high_11
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 7162069 - 7162291
Alignment:
| Q |
18 |
ctctgcaagacagaagaaaaatacatgattagagaaacctggaatgattaagacaagggtaaagacaatcgagttaccttggtcctcttctttatatcta |
117 |
Q |
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| T |
7162069 |
ctctgcaagacagaagaaaaacacatgattagagaaacctggaatgattaagacaagggtaaagacaatcgagttaccttggtcctcttctttatatcta |
7162168 |
T |
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| Q |
118 |
acgtaagtgctacttcggctgactgcttcttgcttatattcgacatcttcggataggatggtccgttgagcttgatggcactgggtcttggtcnnnnnnn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7162169 |
acgtaagtgctacttcggctgactgcttcttgcttatattcgacatcttcggataggatggtccgttgagcttgatggcactgggtcttggtcttttttt |
7162268 |
T |
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| Q |
218 |
agaaatcaaagactccatgtttt |
240 |
Q |
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| T |
7162269 |
agaaatcaaagactccttgtttt |
7162291 |
T |
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