View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8883_high_2 (Length: 451)

Name: NF8883_high_2
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8883_high_2
NF8883_high_2
[»] chr5 (3 HSPs)
chr5 (11-401)||(42555759-42556149)
chr5 (298-430)||(28220180-28220309)
chr5 (206-281)||(28219984-28220059)
[»] chr8 (2 HSPs)
chr8 (330-430)||(43745107-43745205)
chr8 (206-279)||(43744882-43744955)
[»] chr7 (27 HSPs)
chr7 (330-430)||(8585516-8585616)
chr7 (327-432)||(29577477-29577582)
chr7 (298-424)||(3147501-3147624)
chr7 (326-430)||(8602228-8602332)
chr7 (330-430)||(8628790-8628890)
chr7 (326-430)||(6789766-6789870)
chr7 (327-430)||(7877543-7877646)
chr7 (327-430)||(29581651-29581754)
chr7 (333-430)||(8667680-8667777)
chr7 (326-430)||(8382686-8382790)
chr7 (298-420)||(1301689-1301812)
chr7 (330-424)||(17260499-17260593)
chr7 (333-430)||(8576587-8576684)
chr7 (330-427)||(17268197-17268294)
chr7 (330-430)||(8671440-8671540)
chr7 (330-430)||(13333266-13333366)
chr7 (202-281)||(3147326-3147405)
chr7 (326-424)||(8559587-8559685)
chr7 (214-267)||(8646951-8647004)
chr7 (212-281)||(27830902-27830971)
chr7 (225-281)||(6789597-6789653)
chr7 (330-430)||(8636153-8636253)
chr7 (326-418)||(8647131-8647223)
chr7 (204-267)||(8659427-8659490)
chr7 (326-424)||(8538290-8538388)
chr7 (384-430)||(8610229-8610275)
chr7 (330-430)||(10494184-10494284)
[»] chr4 (4 HSPs)
chr4 (330-430)||(9335701-9335801)
chr4 (333-430)||(30775513-30775610)
chr4 (333-430)||(35132709-35132806)
chr4 (204-281)||(35132512-35132589)
[»] chr1 (3 HSPs)
chr1 (330-430)||(34466603-34466703)
chr1 (339-430)||(15595308-15595399)
chr1 (199-275)||(34466826-34466902)
[»] chr2 (10 HSPs)
chr2 (325-424)||(12245222-12245321)
chr2 (330-402)||(12258419-12258491)
chr2 (333-424)||(16661808-16661899)
chr2 (204-281)||(14703472-14703549)
chr2 (202-281)||(12245433-12245512)
chr2 (204-267)||(16662033-16662096)
chr2 (330-424)||(11999652-11999746)
chr2 (337-430)||(12234954-12235047)
chr2 (204-280)||(7542290-7542366)
chr2 (225-281)||(12234774-12234830)
[»] chr6 (1 HSPs)
chr6 (212-281)||(28910654-28910723)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 42556149 - 42555759
Alignment:
Q  11 caaagtcatatccactttcaaatttgaagacacatctctactcattcacttgtaaggtgatacaaactaacacatcttcactcattcaagtaatgccttg 110  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  42556149 caaagtcatatccactttcaaatttgaagacacatcttcactcatttacttataaggtgatacaaactgacacatcttcactcattcaagtaatgccttg 42556050  T
Q  111 caggcaaacttggttagattcattaactaattaagagaacttatgagctaaaacatacagataatgtaaacatcctactatcaaagtactttgcaaagta 210  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42556049 caggcaaacttggttagattcattaaccaattaagagaacttatgagctaaaacatacagataatgtaaacatcctactatcaaagtactctgcaaagta 42555950  T
Q  211 tttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaagaggttgcaatgctttatttcttttgtccaa 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555949 tttcaccatcctactatccaagtcgtctccctcgaggtgagtgttaccagaggtggccttcacttggaagaggttgcaatgctttatttcttttgtccaa 42555850  T
Q  311 tccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttc 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555849 tccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttc 42555759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 298 - 430
Target Start/End: Original strand, 28220180 - 28220309
Alignment:
Q  298 ttcttttgtccaatccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggc 397  Q
    ||||||||||||||||||| |||||||||   ||||||||||||||||||| |||| | | |||||| ||||||||||| |||||||||||||| |||||    
T  28220180 ttcttttgtccaatccatatgcaatagca---gcagcagtgggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggc 28220276  T
Q  398 tttccgctgataatcattgaaataagccggcac 430  Q
    ||||||||||||||||||||||||||| |||||    
T  28220277 tttccgctgataatcattgaaataagcaggcac 28220309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 28219984 - 28220059
Alignment:
Q  206 aagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28219984 aagtagttcaccatcctactatcaaagtcctctcccccgaggtgagtgtttccagcggtggccttcacttggaaga 28220059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 43745107 - 43745205
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    ||||||||||||||||||||||||||||||||||  || |||||||| | ||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  43745107 gcagcagtgggttcattgattatcttcataacatcaagcccagcaatggcaccagcatcta--gtggctttccgctgataatcattgaaataagccggca 43745204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 43744882 - 43744955
Alignment:
Q  206 aagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaa 279  Q
    ||||| |||||||||||| |||| || || ||||| ||||||||||||||||||||||||||||||||||||||    
T  43744882 aagtagttcaccatcctattatcaaaatcctctcctccgaggtgagtgtttccagaggtggccttcacttggaa 43744955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 8585616 - 8585516
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    |||||||||||||||||||||||| |||||||||| || |||||||| | ||| ||||| || |||||||| |||||| |||||||||||||||| ||||    
T  8585616 gcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcattgaaataagcaggca 8585517  T
Q  430 c 430  Q
    |    
T  8585516 c 8585516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 29577582 - 29577477
Alignment:
Q  327 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccg 426  Q
    ||||||||||| |||||||||||||||  ||| ||||| || ||||||||| | || |||||| | |||||||| |||||| |||||||||||||||| |    
T  29577582 gcagcagcagttggttcattgattatccgcattacattgaggccagcaataatgccggcatctttggtggcttttcgctgagaatcattgaaataagctg 29577483  T
Q  427 gcactg 432  Q
    ||||||    
T  29577482 gcactg 29577477  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 424
Target Start/End: Original strand, 3147501 - 3147624
Alignment:
Q  298 ttcttttgtccaatccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggc 397  Q
    |||| ||||||| |||||| |||||||| ||||||| ||   ||||||||||||||  ||||| ||| || |||||||||  ||| ||||||||||| ||    
T  3147501 ttctcttgtccagtccatacgcaatagctgcagcagtag---gttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgc 3147597  T
Q  398 tttccgctgataatcattgaaataagc 424  Q
    ||||||||||  |||||||||||||||    
T  3147598 tttccgctgagcatcattgaaataagc 3147624  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 8602228 - 8602332
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 425  Q
    |||||| ||||| || ||||||||||||  ||| ||||| ||||||||||| | ||| |||||| |||||||||| |||||| ||||||| |||||||||    
T  8602228 agcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagcc 8602327  T
Q  426 ggcac 430  Q
    |||||    
T  8602328 ggcac 8602332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 8628790 - 8628890
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    ||||||||||| |||||||||||| |||||||||| || |||||||| | ||| ||||  || |||||||| |||||| |||||||||||||||| ||||    
T  8628790 gcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcattcatggtggcttttcgctgagaatcattgaaataagcaggca 8628889  T
Q  430 c 430  Q
    |    
T  8628890 c 8628890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 6789766 - 6789870
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 425  Q
    ||||||||| || ||||||||||||||    |||||||| ||||||||||| | ||| |||||||  ||||||||||| ||| ||||||||||||||||     
T  6789766 agcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgagaatcattgaaataagca 6789865  T
Q  426 ggcac 430  Q
    |||||    
T  6789866 ggcac 6789870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 430
Target Start/End: Complemental strand, 7877646 - 7877543
Alignment:
Q  327 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccg 426  Q
    ||||||||||| |||||||| ||||||  ||||||||| || || ||||  | ||| |||||| |||||||||| || ||| ||||||||||||||||||    
T  7877646 gcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccg 7877547  T
Q  427 gcac 430  Q
    ||||    
T  7877546 gcac 7877543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 327 - 430
Target Start/End: Complemental strand, 29581754 - 29581651
Alignment:
Q  327 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccg 426  Q
    ||||||||||| ||||| ||||||||| |||| ||||| || ||||| ||| | || |||||| | |||||||| |||||| |||||||||||||||| |    
T  29581754 gcagcagcagttggttcgttgattatcctcattacattgaggccagctataatgccagcatctttggtggcttttcgctgagaatcattgaaataagcag 29581655  T
Q  427 gcac 430  Q
    ||||    
T  29581654 gcac 29581651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 8667680 - 8667777
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcac 430  Q
    ||||| |||||||||||||||   || ||||| || |||||||||||||| |||||||| ||||| || |||||| |||||||||| ||||| |||||    
T  8667680 gcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggcac 8667777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 8382790 - 8382686
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagcc 425  Q
    |||||| ||||| || ||||||||||||  ||| ||||| || |||||||| | ||| |||||| ||||||||||||| ||| ||||||||||||| ||     
T  8382790 agcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcattgaaatatgca 8382691  T
Q  426 ggcac 430  Q
    |||||    
T  8382690 ggcac 8382686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 420
Target Start/End: Original strand, 1301689 - 1301812
Alignment:
Q  298 ttcttttgtccaatccataagcaatagcagcagcagcag-tgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtgg 396  Q
    |||| ||||| || ||||| |||||||| ||||||| || | |||||||| |||||||  || ||||| || |||||||| | ||| |||||||| ||||    
T  1301689 ttctcttgtcaaaaccatacgcaatagctgcagcagtagctaggttcattaattatctgaatgacattaaggccagcaattgcaccggcatctatggtgg 1301788  T
Q  397 ctttccgctgataatcattgaaat 420  Q
    |||| |||||| ||||||||||||    
T  1301789 cttttcgctgagaatcattgaaat 1301812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 17260499 - 17260593
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagc 424  Q
    |||||| | |||||||| |||| ||||| |||||  || |||||||||  ||| |||||||| |||||||| |||||| ||||||||||||||||    
T  17260499 gcagcaataggttcattaattaacttcaaaacataaaggccagcaataacaccagcatctatggtggcttttcgctgagaatcattgaaataagc 17260593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 8576587 - 8576684
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcac 430  Q
    ||||| |||||||||||||||| ||| ||||| ||||||||||| | |||||||||| | |||||| | || ||  ||||||| |||||||| |||||    
T  8576587 gcagtcggttcattgattatctgcatgacattgagaccagcaattgcacctgcatctttagtggctcttcgttgggaatcattaaaataagcaggcac 8576684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 427
Target Start/End: Original strand, 17268197 - 17268294
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccgg 427  Q
    |||||||| ||||||||||||| |||||  ||||| || ||||||||   ||| |||||||| |||||||| |||||| |||| ||||| ||||||||    
T  17268197 gcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaatcgttgaagtaagccgg 17268294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 8671540 - 8671440
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    |||||||| |||||||||||||||   || ||||| || |||||||||||||| ||||| || |||||  | |||||| |||||||||| ||||| ||||    
T  8671540 gcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatcaatggtggccgttcgctgagaatcattgaagtaagctggca 8671441  T
Q  430 c 430  Q
    |    
T  8671440 c 8671440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 13333366 - 13333266
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    |||||||| ||||||||||||||    || | ||| || |||||||||| ||| |||||||| ||||| || |||||| |||||||||| ||||||||||    
T  13333366 gcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggca 13333267  T
Q  430 c 430  Q
    |    
T  13333266 c 13333266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 3147326 - 3147405
Alignment:
Q  202 tgcaaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||||||| |||||||||||| |||| ||||| |||||||| ||||| |||||||| | | ||||||| ||||| ||||    
T  3147326 tgcaaagtagttcaccatcctattatcaaagtcctctcccccaaggtgggtgtttcctgcgatggccttaacttgaaaga 3147405  T

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Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 8559587 - 8559685
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagc 424  Q
    |||||| ||||| |||||||||||||||| ||| ||||| |||||||||||   |||||||||| | |||||| | |  ||| ||||||| ||||||||    
T  8559587 agcagctgcagttggttcattgattatctgcattacattaagaccagcaatttcacctgcatctttggtggctcttctttgagaatcattaaaataagc 8559685  T

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Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 8646951 - 8647004
Alignment:
Q  214 caccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggc 267  Q
    |||||| |||||||| ||||| ||||| ||||||||||||||||||| ||||||    
T  8646951 caccattctactatcaaagtcctctcctccgaggtgagtgtttccagcggtggc 8647004  T

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Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 27830971 - 27830902
Alignment:
Q  212 ttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    |||||||||||| |||| ||||| ||||| || ||||||||||||||||  || ||||| ||||||||||    
T  27830971 ttcaccatcctattatcaaagtcctctccaccaaggtgagtgtttccagcagttgccttaacttggaaga 27830902  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 6789597 - 6789653
Alignment:
Q  225 tatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    |||| ||||| ||||| ||||||||||||||||||  ||||||||| ||||||||||    
T  6789597 tatcaaagtcctctcctccgaggtgagtgtttccaccggtggccttaacttggaaga 6789653  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 8636253 - 8636153
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    |||||||| |||||||||||||||   || ||||| || || ||||| | ||| |||||| | |||| ||| |||||| |||||||||||||||| ||||    
T  8636253 gcagcagttggttcattgattatccgaattacattaaggccggcaatggcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggca 8636154  T
Q  430 c 430  Q
    |    
T  8636153 c 8636153  T

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Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 418
Target Start/End: Original strand, 8647131 - 8647223
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaa 418  Q
    ||||||||| || |||||||||||||||   || | ||| || |||||||| |  || |||||||| |||||||| |||||||||||||||||    
T  8647131 agcagcagctgttggttcattgattatccggatgatattaaggccagcaatggccccggcatctatagtggcttttcgctgataatcattgaa 8647223  T

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Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 8659427 - 8659490
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggc 267  Q
    ||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| |||||    
T  8659427 caaagtagttcaccattctgctatcaaagtcctctcctccaaggtgagtgtttccagaagtggc 8659490  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 8538290 - 8538388
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagc 424  Q
    ||||||||| || |||||||||||||||  ||| ||||| || ||||||||   ||| |||||| | |||||| | |||||  ||||||||||||||||    
T  8538290 agcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattgaaataagc 8538388  T

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Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 8610229 - 8610275
Alignment:
Q  384 gcatctattgtggctttccgctgataatcattgaaataagccggcac 430  Q
    |||||| ||||||||||||||||| ||||||| |||||||| |||||    
T  8610229 gcatcttttgtggctttccgctgagaatcattaaaataagcaggcac 8610275  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 10494284 - 10494184
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    |||||||| |||||||||||||||   || ||||| || |||||||||| ||| ||||| || || || || || ||| |||| ||||| ||||||||||    
T  10494284 gcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggca 10494185  T
Q  430 c 430  Q
    |    
T  10494184 c 10494184  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 9335801 - 9335701
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    |||||||| |||||||||||||||   || ||||| || |||||||||||||| |||||||| ||||| || |||||| |||||||||| ||||| ||||    
T  9335801 gcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggca 9335702  T
Q  430 c 430  Q
    |    
T  9335701 c 9335701  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 30775513 - 30775610
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcac 430  Q
    |||||||| ||||| |||||  |||||||||| ||||||||||| | ||| ||||| || |||||||| |||||   ||||||||||||||| |||||    
T  30775513 gcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 30775610  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 35132709 - 35132806
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcac 430  Q
    ||||| |||||||| ||||   ||||||||||  |||||||||||| ||| |||||||| |||||||| || ||| ||||| | |||||||| |||||    
T  35132709 gcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcac 35132806  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 35132512 - 35132589
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||||| |||||||| ||  |||| ||||| ||||| ||||| ||||||||||| |  |||||||| ||||||||||    
T  35132512 caaagtagttcaccattctgttatcaaagtcctctccaccgagatgagtgtttccggcagtggccttaacttggaaga 35132589  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 34466703 - 34466603
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggca 429  Q
    ||||||||||||||||||||||| | || |||||| || |||||||||||||| ||||| |  || ||||| |||||| ||||||| |||||||| ||||    
T  34466703 gcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatccacagtagcttttcgctgagaatcattaaaataagcaggca 34466604  T
Q  430 c 430  Q
    |    
T  34466603 c 34466603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 15595308 - 15595399
Alignment:
Q  339 ggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcac 430  Q
    ||||||||||||| |   |||||||| || |||||||| | |||||||||||| |||||||| || ||| ||||||||| |||||| |||||    
T  15595308 ggttcattgattacccgtataacattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattgagataagcaggcac 15595399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 34466902 - 34466826
Alignment:
Q  199 ctttgcaaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcactt 275  Q
    |||||||||||  ||| |||| ||| |||| ||||| ||||  |||||||||||||| ||||| |||||||| ||||    
T  34466902 ctttgcaaagtggttcgccattctattatcaaagtcctctcgtccgaggtgagtgttaccagaagtggccttaactt 34466826  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 424
Target Start/End: Complemental strand, 12245321 - 12245222
Alignment:
Q  325 cagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagc 424  Q
    |||| ||||||||||||||||| |||| | |||||||||| ||||||||||| |  || |||||||| || ||||| |||||| ||||| | ||||||||    
T  12245321 cagctgcagcagtgggttcattcattaccctcataacattgagaccagcaattgagccagcatctatcgttgcttttcgctgagaatcactaaaataagc 12245222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 12258491 - 12258419
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttcc 402  Q
    |||||||| |||||||| | |||||||||||||||||| ||| ||||| ||||  ||||||| ||||||||||    
T  12258491 gcagcagtaggttcatttaatatcttcataacattcaggccaacaatattacccacatctatagtggctttcc 12258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 424
Target Start/End: Complemental strand, 16661899 - 16661808
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagc 424  Q
    ||||||||||||||||||||| ||| ||| || || |||||||| | ||| ||||| || |||||||| |||||| |||| || ||||||||    
T  16661899 gcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcgttaaaataagc 16661808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 14703472 - 14703549
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||||| |||||||| ||  |||| ||||| |||||||||||||||||||||||||  || ||||| | ||||||||    
T  14703472 caaagtagttcaccattctgttatcgaagtcctctcccccgaggtgagtgtttccagcagtagccttaatttggaaga 14703549  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 12245512 - 12245433
Alignment:
Q  202 tgcaaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||||||| || ||||| ||| |||| || || ||||| || ||||||||||||||||  |||||||| ||||||||||    
T  12245512 tgcaaagtagtttaccattctattatcaaaatcctctcctccaaggtgagtgtttccagcagtggccttaacttggaaga 12245433  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 16662096 - 16662033
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggc 267  Q
    ||||||| |||| ||| ||  |||| ||||| |||||||||||||||||||||||||| |||||    
T  16662096 caaagtagttcaacattctgttatcaaagtcctctcccccgaggtgagtgtttccagaagtggc 16662033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 11999652 - 11999746
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagc 424  Q
    ||||||||||||||||| |||| | | |||||||| |  |||||||| | ||| |||||||| |||||||| || ||| ||||| | ||||||||    
T  11999652 gcagcagtgggttcattcattacccttataacattgatgccagcaattgcaccggcatctatagtggcttttcgttgagaatcactaaaataagc 11999746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 430
Target Start/End: Original strand, 12234954 - 12235047
Alignment:
Q  337 tgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattgaaataagccggcac 430  Q
    ||||||| || |||| | |||||||||| || ||||||||   ||| |||||||| || ||||| || ||| |||||||||||||||| |||||    
T  12234954 tgggttcgttcattaccctcataacattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcac 12235047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 7542290 - 7542366
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaag 280  Q
    ||||||| ||| |||| ||| |||| ||||| ||||| || ||||||||||| ||||  |||||||| |||||||||    
T  7542290 caaagtagttcgccattctattatcaaagtcttctccaccaaggtgagtgttgccagcagtggccttaacttggaag 7542366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 12234774 - 12234830
Alignment:
Q  225 tatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    |||| ||||| ||||||||||||||||||||||| |  ||||| || ||||||||||    
T  12234774 tatcaaagtcctctcccccgaggtgagtgtttccggctgtggctttaacttggaaga 12234830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 28910654 - 28910723
Alignment:
Q  212 ttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    |||||||||||| |||| | ||| ||  ||||||||||||||||||||| ||||||||| ||||||||||    
T  28910654 ttcaccatcctattatcaatgtcctcgaccccgaggtgagtgtttccagcggtggccttaacttggaaga 28910723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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