View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8883_high_3 (Length: 428)
Name: NF8883_high_3
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 259 - 412
Target Start/End: Complemental strand, 11227519 - 11227366
Alignment:
| Q |
259 |
gtacaaagttcataaaacttaattgagttgaaaagcacaataaactatgacttatagcttatcagaaaagcacaaaatgttcatataattaaactactct |
358 |
Q |
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| T |
11227519 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaactactct |
11227420 |
T |
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| Q |
359 |
aacatgaaattatcatcttcatcactgtagttattatgatattcatcaagattt |
412 |
Q |
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| T |
11227419 |
aacatgaaattagcatcttcatcactacagttattatgatattcatcaagattt |
11227366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 11227775 - 11227597
Alignment:
| Q |
1 |
catttggaattaaggaagggccagactgattgttgttagtttgttggtgttgtggatgaacttcattttccatatttact---tgaacttctagccctcg |
97 |
Q |
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| T |
11227775 |
catttggaattaaggaagggccagactgattgttgttgctttgttggtgttgtggatgaacttcattttccgtatttccagactgattgttgttacctcg |
11227676 |
T |
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| Q |
98 |
tcgtaacctttctagcatatcttttcttgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgct |
176 |
Q |
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| T |
11227675 |
tcgtaacctttctagcatatcttttcctgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgct |
11227597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 381
Target Start/End: Complemental strand, 10128187 - 10128065
Alignment:
| Q |
259 |
gtacaaagttcataaaacttaattgagttgaaaagcacaataaa--ctatgacttatagcttatcagaaaagcacaaaatgttcatataattaaactact |
356 |
Q |
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| T |
10128187 |
gtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttcatataattaaac--ca |
10128090 |
T |
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| Q |
357 |
ctaacatgaaattatcatcttcatc |
381 |
Q |
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| T |
10128089 |
ctaacattaaattatcatgttcatc |
10128065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 10128340 - 10128266
Alignment:
| Q |
102 |
aacctttctagcatatcttttcttgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgct |
176 |
Q |
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| T |
10128340 |
aacctttctaccatatcttttcctggagacttgcatttctacttcatcttaaatcaaatatctgcacaatttgct |
10128266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 11227830 - 11227775
Alignment:
| Q |
6 |
ggaattaaggaagggccagactgattgttgttagtttgttggtgttgtggatgaac |
61 |
Q |
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| T |
11227830 |
ggaattaaggaagggccagactgattattgttgctttgttggtgttatggctgaac |
11227775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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