View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8883_high_5 (Length: 326)
Name: NF8883_high_5
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 53819748 - 53819464
Alignment:
| Q |
18 |
tcttctagtttgatcaaaattgttctcattatttttgcccaaaatactccatgggaagctagaaattaatccttctaaggtatcgagatctatttaagag |
117 |
Q |
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| T |
53819748 |
tcttctagtttgatcaaaattgttctcattatttttgcccaaaatactccatgggaagctagaaattaatccttctaaggtattgacatctatttaagag |
53819649 |
T |
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| Q |
118 |
tttcacatctatcaacgagtgttcttttacatgcacatgtcaaaatctaacttataatcaaatggttaggagactcaattgggttgcacttatttctcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819648 |
tttcacatctatcaacgagtgttcttttacatgcacatgtcaaaatctaacttataatcaaatggttaggagactcaattgggttgcacttatttctcat |
53819549 |
T |
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| Q |
218 |
ttgctagactaaaaaacagagtgtgtgtacatatgaaaatttcatggagacgttcataataacctctcacatgtttacaccacca |
302 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819548 |
ttgctagactaaaaaacagtgtgtgtgtacatatgaaaatttcatggagacgttcataataacctctcacatgtttacaccacca |
53819464 |
T |
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