View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8883_high_8 (Length: 269)
Name: NF8883_high_8
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 55780748 - 55780598
Alignment:
| Q |
1 |
tatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatcttttttgttaagtatctcttggtcctcttataca |
100 |
Q |
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|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55780748 |
tatttgatagatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatcttttttgttaagtatctcttggtcctcttataca |
55780649 |
T |
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| Q |
101 |
tttgtttctgctggttttagttaacgtacattctaaagtcatttcaaagct |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55780648 |
tttgtttctgctggttttagttaacgtacattctaaagtcatttcaaagct |
55780598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 55844928 - 55844778
Alignment:
| Q |
1 |
tatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatcttttttgttaagtatctcttggtcctcttataca |
100 |
Q |
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|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55844928 |
tatttgatagatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatcttttttgttaagtatctcttggtcctcttataca |
55844829 |
T |
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| Q |
101 |
tttgtttctgctggttttagttaacgtacattctaaagtcatttcaaagct |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55844828 |
tttgtttctgctggttttagttaacgtacattctaaagtcatttcaaagct |
55844778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 38447960 - 38448111
Alignment:
| Q |
1 |
tatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatcttttttgttaag--tatctcttggtcctcttata |
98 |
Q |
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||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||| || || ||| | ||| |||||||||| |
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| T |
38447960 |
tatttgatatatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatattttttcttgagtatatatattgctcctcttata |
38448059 |
T |
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| Q |
99 |
catttgtttctgctggttttagttaacgtacattctaaagtcatttcaaagct |
151 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38448060 |
catttgtttcagctggttttagttaac-tacattctaaagtcatttcaaagct |
38448111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 38550309 - 38550158
Alignment:
| Q |
1 |
tatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatcttttttgttaag--tatctcttggtcctcttata |
98 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||| || || ||| | ||| |||||||||| |
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| T |
38550309 |
tatttgatatatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatattttttcttgagtatatatattgctcctcttata |
38550210 |
T |
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| Q |
99 |
catttgtttctgctggttttagttaacgtacattctaaagtcatttcaaagct |
151 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38550209 |
catttgtttcagctggttttagttaac-tacattctaaagtcatttcaaagct |
38550158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 38448197 - 38448276
Alignment:
| Q |
175 |
ttttatttaactaggatgatgaatataatcaaatactgataactaaatgcaaccattcaaactcaacttcatcaacaact |
254 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38448197 |
ttttatttaactaggatgatgaatataatcaaatactgataactaaatgcaaccattcaaactcaacttcatcaacaact |
38448276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 38550074 - 38549995
Alignment:
| Q |
175 |
ttttatttaactaggatgatgaatataatcaaatactgataactaaatgcaaccattcaaactcaacttcatcaacaact |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38550074 |
ttttatttaactaggatgatgaatataatcaaatactgataactaaatgcaaccattcaaactcaacttcatcaacaact |
38549995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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