View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8883_low_15 (Length: 246)
Name: NF8883_low_15
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 42556492 - 42556264
Alignment:
| Q |
18 |
gacatctatgaagcacataagagctgaatgtaatataaatcctgtttagtggaaaagataaatgtcatatattttgttatgctggaatcctgcttttgtt |
117 |
Q |
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| T |
42556492 |
gacatctatgaagcacataagagttgaatgtaatataaatcctgtttagtggaaaagataaatgtcatatattttgttatgctggaatcctgcttttgtt |
42556393 |
T |
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| Q |
118 |
gggcaaattttccaactctgcacctaacattttctgtcaaagttatattgaaatcaaatctctcaaacctattttgctaacaaacctttttatcagtaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42556392 |
gggcaaattttccaactctgcacctaacattttctgtccaagttatattcaaatcaaatctctcaaacctattttgctaacaaacctttttatacgtaga |
42556293 |
T |
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| Q |
218 |
aataagatcctttgatgaaaaatagaaag |
246 |
Q |
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| T |
42556292 |
aataagatcctttgatgaaaaatagaaag |
42556264 |
T |
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