View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8883_low_16 (Length: 243)
Name: NF8883_low_16
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7162330 - 7162559
Alignment:
| Q |
1 |
aacaaataataagttaggaaagggcaaaatctccnnnnnnnntaaattactatttacatgcttctctcagttcacaagagttattcattggtgtgattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7162330 |
aacaaataataagttaggaaagggcaaaatctccaaaacaa-taaattactatttacatgcttctctcagttcacaagagttattcattggtgtgattgt |
7162428 |
T |
|
| Q |
101 |
ttgaacaacaatttggacaacaattttaatttgaaacaccctacaaccaaaaccatgtattcacaattctaatttagtcgtatctacatttgctttattc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7162429 |
ttgaacaacaatttggacaacaattttaatttgaaacaccctacaaccaaaaccttgtattcacaattctaatttagtcgtatctacatttgctttattc |
7162528 |
T |
|
| Q |
201 |
acaattctataatatgtattatctttgatgt |
231 |
Q |
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|
||||||||||||||||||||||||||||||| |
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| T |
7162529 |
acaattctataatatgtattatctttgatgt |
7162559 |
T |
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