View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8883_low_5 (Length: 351)
Name: NF8883_low_5
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 31 - 334
Target Start/End: Complemental strand, 1096453 - 1096143
Alignment:
| Q |
31 |
aatgaaagtactatgttttatttgaggataagctaaactatgaagaagcatttaaatggtttgttagtgaatatgatttatgat-------aggatgctt |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1096453 |
aatgaaagtactatgttttatttgaggataagctaaactatgaagaagcatttaaatggtttgttagtgaatatgatttatgatttatgataggatgctt |
1096354 |
T |
|
| Q |
124 |
aacttatcttcatcacatttggaaagaacttacttatatactgtcagagaaacaaccatggctattgcttcttttctcgctagccctgcaggaccagcat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1096353 |
aacttatcttcatcacatttggaaagaacttacttatatactgtcagagaaacaaccatggctattgcttcttttctcgctagccctgcaggaccagcat |
1096254 |
T |
|
| Q |
224 |
tcgtctaaccaacttaaggatccgactttgttcaaattttctgttgcatcctgctttagtatatgtgttatacatgactgattgtttgtaaagatcattg |
323 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1096253 |
tcgtctaaccaacttaaggatccgattttgttcaaattttctgttgcatcctgctttagtatatgtgttatacatgactgattgtttgtaaagatcattg |
1096154 |
T |
|
| Q |
324 |
atgtttgtctt |
334 |
Q |
| |
|
||||||||||| |
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|
| T |
1096153 |
atgtttgtctt |
1096143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 137 - 327
Target Start/End: Original strand, 1075826 - 1076023
Alignment:
| Q |
137 |
cacatttggaaagaacttacttatatactgtcagagaaacaaccatggctattgct--tcttttctcgctagccctgcaggaccagcattcgtctaacca |
234 |
Q |
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||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |
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| T |
1075826 |
cacattttgaaagaatctacctatatactgtcagagaaacaaccatggttattgcagattttttttcgctagccctgcaggaccagcattcgtctaacca |
1075925 |
T |
|
| Q |
235 |
acttaaggatccgactttgttcaaattttctgttgcatcctgctttagtatatgtgttata-----catgactgattgtttgtaaagatcattgatgt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1075926 |
acttaaggatccgactttgttcaaattttctgttgcatcctgctttagtatatgtgttatacataccatgactgattgtttgtaaagatcattgatgt |
1076023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 1074578 - 1074685
Alignment:
| Q |
13 |
tttggtggtcgggagaataatgaaagtactatgttttatttgaggataagctaaactatgaagaagcatttaaatggtttgttagtgaatatgatttatg |
112 |
Q |
| |
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||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
1074578 |
tttggtggtagggagaaaaatgaaagtactattttttatttgaggataagctaaactatgaagaaggatttaaatggtttgttagtcaatatgatttatg |
1074677 |
T |
|
| Q |
113 |
ataggatg |
120 |
Q |
| |
|
|||||||| |
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|
| T |
1074678 |
ataggatg |
1074685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 137 - 331
Target Start/End: Complemental strand, 5128722 - 5128522
Alignment:
| Q |
137 |
cacatttggaaagaacttacttatatactgtcagagaaacaaccatggctattgc-ttcttttctcgctagccctgcaggaccagcattcgtctaaccaa |
235 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
5128722 |
cacattttgaaagaatctacctatatactgtcagagaaacgaccatggttattgcagatttttttcgctagccctgcaggaccagcattcgtctaaccaa |
5128623 |
T |
|
| Q |
236 |
cttaaggatccgactttgttcaaattttctgttgcatcctgctttagtatatgtgttata-----catgactgattgtttgtaaagatcattgatgtttg |
330 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5128622 |
cttaaggatccgactttgttcaaattttctgttgcaccctgctttagtatatgtgttatacataccatgactgattgtttgtaaagatcattgatgtttg |
5128523 |
T |
|
| Q |
331 |
t |
331 |
Q |
| |
|
| |
|
|
| T |
5128522 |
t |
5128522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 41304489 - 41304437
Alignment:
| Q |
207 |
ccctgcaggaccagcattcgtctaaccaacttaaggatccgactttgttcaaa |
259 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |
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| T |
41304489 |
ccctgcaggaccaacattcgtctaaccaacttaaggatctgactttgtgcaaa |
41304437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 41304565 - 41304525
Alignment:
| Q |
118 |
atgcttaacttatcttcatcacatttggaaagaacttactt |
158 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
41304565 |
atgcttaacttatcttcatcacattttgaaagaacttactt |
41304525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 13015180 - 13015147
Alignment:
| Q |
118 |
atgcttaacttatcttcatcacatttggaaagaa |
151 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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| T |
13015180 |
atgcttaacttatcttcatcacattttgaaagaa |
13015147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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