View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8883_low_6 (Length: 351)

Name: NF8883_low_6
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8883_low_6
NF8883_low_6
[»] chr3 (55 HSPs)
chr3 (16-351)||(2476370-2476708)
chr3 (16-350)||(7324408-7324742)
chr3 (16-351)||(9561962-9562291)
chr3 (16-351)||(2491815-2492156)
chr3 (16-347)||(2659129-2659460)
chr3 (16-219)||(9565806-9566009)
chr3 (36-219)||(754606-754795)
chr3 (20-219)||(2631222-2631427)
chr3 (16-219)||(7334216-7334425)
chr3 (16-144)||(9594601-9594729)
chr3 (19-152)||(2635662-2635792)
chr3 (16-139)||(2644339-2644462)
chr3 (74-197)||(747179-747302)
chr3 (19-134)||(7442957-7443072)
chr3 (16-150)||(7942425-7942559)
chr3 (295-351)||(9566094-9566150)
chr3 (288-351)||(2644614-2644677)
chr3 (36-103)||(13498211-13498278)
chr3 (28-98)||(37753334-37753404)
chr3 (39-144)||(768329-768434)
chr3 (35-132)||(2502106-2502203)
chr3 (172-260)||(2474930-2475018)
chr3 (38-106)||(43991944-43992012)
chr3 (37-104)||(2456235-2456302)
chr3 (240-343)||(9594846-9594949)
chr3 (297-351)||(2501890-2501944)
chr3 (36-106)||(14888609-14888679)
chr3 (36-97)||(7430533-7430594)
chr3 (36-105)||(9587182-9587251)
chr3 (39-91)||(2442038-2442090)
chr3 (292-351)||(2474838-2474898)
chr3 (22-90)||(4142117-4142185)
chr3 (291-343)||(7443256-7443308)
chr3 (292-343)||(768615-768666)
chr3 (37-104)||(771497-771564)
chr3 (39-90)||(803218-803269)
chr3 (291-338)||(2631088-2631135)
chr3 (39-90)||(2678399-2678450)
chr3 (39-90)||(2696732-2696783)
chr3 (39-90)||(3754600-3754651)
chr3 (39-90)||(4157944-4157995)
chr3 (15-69)||(746359-746413)
chr3 (16-90)||(989396-989470)
chr3 (37-106)||(1437980-1438048)
chr3 (39-88)||(2459277-2459326)
chr3 (294-351)||(9608626-9608683)
chr3 (238-351)||(44001330-44001443)
chr3 (295-351)||(754880-754936)
chr3 (22-102)||(783782-783862)
chr3 (38-90)||(1891063-1891115)
chr3 (36-104)||(9608341-9608409)
chr3 (238-341)||(747352-747455)
chr3 (292-350)||(7334537-7334595)
chr3 (165-219)||(7443121-7443175)
chr3 (295-344)||(679491-679540)
[»] chr2 (5 HSPs)
chr2 (16-134)||(33038116-33038234)
chr2 (16-134)||(33020269-33020387)
chr2 (37-103)||(33026644-33026710)
chr2 (22-100)||(34560900-34560978)
chr2 (39-90)||(36577366-36577417)
[»] scaffold0044 (1 HSPs)
scaffold0044 (16-151)||(89082-89217)
[»] chr5 (10 HSPs)
chr5 (39-90)||(23766862-23766913)
chr5 (39-90)||(23816710-23816761)
chr5 (36-134)||(20292951-20293049)
chr5 (36-134)||(20301399-20301497)
chr5 (36-134)||(20305812-20305910)
chr5 (36-134)||(20310216-20310314)
chr5 (39-90)||(11081813-11081864)
chr5 (39-90)||(23769646-23769697)
chr5 (39-90)||(23819494-23819545)
chr5 (307-347)||(20292717-20292757)
[»] chr6 (4 HSPs)
chr6 (36-89)||(24417483-24417536)
chr6 (39-96)||(370785-370842)
chr6 (39-92)||(1459541-1459594)
chr6 (39-92)||(1470923-1470976)
[»] chr1 (2 HSPs)
chr1 (39-86)||(51381455-51381502)
chr1 (169-215)||(51381594-51381640)
[»] chr4 (2 HSPs)
chr4 (16-86)||(20016162-20016232)
chr4 (16-90)||(20019749-20019823)
[»] scaffold0015 (1 HSPs)
scaffold0015 (40-96)||(32330-32386)
[»] chr7 (2 HSPs)
chr7 (39-91)||(1078160-1078212)
chr7 (16-100)||(39298967-39299051)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 2476708 - 2476370
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2476708 atcttgcatgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 2476609  T
Q  116 acacacaagcaatccctcaccacatccaagg---tccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagag 212  Q
    | |||||||||||||||||| |||||||||    ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2476608 atacacaagcaatccctcactacatccaagaagatccacgaatgacacttgtaatcaggtagcaaaagcagttgatatgactccttctttaaatcaagag 2476509  T
Q  213 aaagaatttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccccgtctacaaatgctgccagaatatgggatgtcatctattct 312  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |  ||||||||||||||| |  |||||    
T  2476508 aaagaatttttgaatcatcaagggccaaccaattaagagtgccactcacaaatactccccgtctacaaatgccgtaagaatatgggatgtcctgcattct 2476409  T
Q  313 tctccaataatcagtccccaaagtattaacactaacttc 351  Q
    | |||||||||||||||||||||||||||||||||||||    
T  2476408 tgtccaataatcagtccccaaagtattaacactaacttc 2476370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 7324408 - 7324742
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| | ||||||||| || | || ||    
T  7324408 atcttgcatgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaagacatatcaccagttccaaag 7324507  T
Q  116 acacacaagcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaa 215  Q
    | ||  | ||||||||||||||||| |||| ||||  | | ||  ||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  7324508 agaccaaggcaatccctcaccacatgcaagatccataagtcattttcggaatcaggtagcaaaagatgttgatatgactccttgtttaaatcaagcgaaa 7324607  T
Q  216 gaatttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccccgtctacaaatgctgccagaatatgggatgtcatctattcttct 315  Q
    |||| ||||||||||||   | ||||||||||| ||||||| | | |||||||||| ||| ||||||| || |||||||||||||||| ||||||||| |    
T  7324608 gaatatttgaatcatcacttgccaaccaattaacagtgccattgacaaatactccctgtccacaaatgttgtcagaatatgggatgtcctctattcttgt 7324707  T
Q  316 ccaataatcagtccccaaagtattaacactaactt 350  Q
    |||||||||||||||||||||||||||||||||||    
T  7324708 ccaataatcagtccccaaagtattaacactaactt 7324742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 9561962 - 9562291
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||||||||||||||||  |||| ||||||||||||||||||| ||||||||| |  ||||||||||||||||||| ||||| || |||||  ||  ||    
T  9561962 atcttgcatgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaacaaattactagtagctaag 9562061  T
Q  116 acacacaagcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaa 215  Q
    | ||||||||||| ||| | |||| ||||| ||||| | | || ||||  |||||||||||||| ||||||||| |||||||||| || ||||||||| |    
T  9562062 atacacaagcaattccttagcacacccaagatccacaagtcattctcggtatcaggtagcaaaacctgttgatacgactccttctctacatcaagagaga 9562161  T
Q  216 gaatttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccccgtctacaaatgctgccagaatatgggatgtcatctattcttct 315  Q
    ||||   ||||||||||   | ||||||||||| ||||||||||| ||||||||||  || | ||||| |      |||||||||||| ||||||||  |    
T  9562162 gaataaatgaatcatcacttgccaaccaattaacagtgccactcacaaatactccctctccaaaaatgtt------atatgggatgtcctctattctctt 9562255  T
Q  316 ccaataatcagtccccaaagtattaacactaacttc 351  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9562256 ccaataatcagtccccaaagtataaacactaacttc 9562291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 2492156 - 2491815
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||||||||||||||||  | |||||||||||||||||||||  ||||||||| |  |||||||||||||||| || || | ||||| ||| |||| |     
T  2492156 atcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacattcaaaatcctatcaatagttgcaaaa 2492057  T
Q  116 acacacaagcaatccctcaccacatccaaggtccacgaatgatactcgt------aatcaggtagcaaaagctgttgatatgactccttctttaaatcaa 209  Q
    ||||||||||||||||||| ||||   ||| || |||||| || ||| |      |||||||||| ||||| ||||||||||||||||||| ||||||||    
T  2492056 acacacaagcaatccctcagcacacttaagatcaacgaatcattctcattctcaaaatcaggtaggaaaagttgttgatatgactccttctctaaatcaa 2491957  T
Q  210 gagaaagaatttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccccgtctacaaatgctgccagaatatgggatgtcatctat 309  Q
    ||||||||||   ||||||||||   |  |||||||||| ||||||||| |  ||||||||   || | |||||  | |||||||||||||||| |  ||    
T  2491956 gagaaagaatacatgaatcatcacatgctaaccaattaacagtgccactaacgaatactccgtttccataaatggggtcagaatatgggatgtccttgat 2491857  T
Q  310 tcttctccaataatcagtccccaaagtattaacactaacttc 351  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  2491856 tcttgtccaataatcagtccccaaagtataaacactaacttc 2491815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 2659129 - 2659460
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||  | |   |||||||  |||| ||    
T  2659129 atcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttgcaaag 2659228  T
Q  116 acacacaagcaatccctcaccacatccaaggtccacgaatgatactcgt------aatcaggtagcaaaagctgttgatatgactccttctttaaatcaa 209  Q
    |||||||||||||||||||||||| ||| |  |||||||| ||  || |      |||||||||||  ||||| |||||| |||||||||| ||||||||    
T  2659229 acacacaagcaatccctcaccacacccacgtcccacgaattattttcattgtcgaaatcaggtagccgaagcttttgatacgactccttctctaaatcaa 2659328  T
Q  210 gagaaagaatttttgaatcatcaagggtcaaccaattaaaagtgccactcaaaaatactccccgtctacaaatgctgccagaatatgggatgtcatctat 309  Q
    |||| | |||    ||  |||||   |  |||||||||| ||||||||| | ||||| |||  ||| | |||||  |  ||||||||| ||||| | |||    
T  2659329 gagatataat----ga--catcatatgcaaaccaattaacagtgccactaacaaatagtccatgtccagaaatggggttagaatatggaatgtcctttat 2659422  T
Q  310 tcttctccaataatcagtccccaaagtattaacactaa 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2659423 tcttctccaataatcagtccccaaagtattaacactaa 2659460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 9565806 - 9566009
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    |||||| |||||||||||  |||||||||||||||||||||||| || ||| || |  ||||||||||||||||||||| |||||||||||  |||| ||    
T  9565806 atcttgtatgttaggaacaatgtacaatttagtccaagactcttgatctccgtactccttcataatccaaacatccatatacatatcactacttgcaaag 9565905  T
Q  116 acacacaagcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaa 215  Q
    |||||||||||| ||||||||| | ||||  || || ||| |  || | ||| |||||||||||| |||||||||||||| ||   ||||||||||||||    
T  9565906 acacacaagcaacccctcaccaaacccaacatcgaccaatcaatcttggaattaggtagcaaaagatgttgatatgactcttttactaaatcaagagaaa 9566005  T
Q  216 gaat 219  Q
    ||||    
T  9566006 gaat 9566009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 754606 - 754795
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatc------actagctgcagagacacacaagcaatc 129  Q
    |||||||||||||||||||||||| || |||||| |  |||||||||||||||||||||||||||||      ||||  | |||||| | ||||||||||    
T  754606 tgtacaatttagtccaagactcttgatctccatactccttcataatccaaacatccataaacatatcactactactacttccagagagaaacaagcaatc 754705  T
Q  130 cctcaccacatccaaggtccacgaatgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaagaat 219  Q
    ||||| || | ||||  |  |||||| ||| | | ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  754706 cctcatcaaacccaacatggacgaatcataattggaattaggtagcaaaagatgttgatatgactccttctctaaatcaagagaaagaat 754795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 2631427 - 2631222
Alignment:
Q  20 tgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacac 119  Q
    ||||||| ||||||  || ||||||||||||||||||||| ||||||||| |  |||||||||||||||| || |||||||||||||| |||| ||||||    
T  2631427 tgcatgtcaggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaacatatcactagttgcaaagacac 2631328  T
Q  120 acaagcaatccctcaccacatccaaggtccacgaa------tgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaagaga 213  Q
    ||||| |||| |||| |||| |||| ||||| |||      | || |||| |||||||| |  |||||| |||||||||||| || | ||||||||||||    
T  2631327 acaagtaatcactcagcacacccaatgtccaggaatatgactcatcctcgaaatcaggtgggtaaagctcttgatatgactcattttctaaatcaagaga 2631228  T
Q  214 aagaat 219  Q
    ||||||    
T  2631227 aagaat 2631222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 7334216 - 7334425
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||| || ||||||||  |||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||  | | |||||||||   ||| ||    
T  7334216 atctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatcccaatatatatcactactggcaaag 7334315  T
Q  116 acacacaagcaatccctcaccacatccaaggtccac-gaa-----tgatactcgtaatcaggtagcaaaagctgttgatatgactccttctttaaatcaa 209  Q
    |||||||||||||||||||||| ||||||  ||||| |||     | || ||| |||| |||||| ||||| || ||||||||||| |||| ||||||||    
T  7334316 acacacaagcaatccctcaccatatccaaaatccactgaacattttcattctcataattaggtaggaaaagttgctgatatgactctttctctaaatcaa 7334415  T
Q  210 gagaaagaat 219  Q
    ||||||||||    
T  7334416 gagaaagaat 7334425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 9594601 - 9594729
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||||||||||||||||   | ||||||||||||||||||||| |||||| || |  |||||||||||||||| || |||||||||||||| | || ||    
T  9594601 atcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaag 9594700  T
Q  116 acacacaagcaatccctcaccacatccaa 144  Q
    ||||||||||||||||||| |||||||||    
T  9594701 acacacaagcaatccctcagcacatccaa 9594729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 2635792 - 2635662
Alignment:
Q  19 ttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagaca 118  Q
    |||||||||||||||  |||||||||||||||||||||||| | ||||||| |    ||||||||||||||||| ||||| |||||||| |||| |||||    
T  2635792 ttgcatgttaggaacactgtacaatttagtccaagactcttcacttccatactc---cataatccaaacatccaaaaacacatcactagttgcaaagaca 2635696  T
Q  119 cacaagcaatccctcaccacatccaaggtccacg 152  Q
    |||| ||||| ||||| |||||||||| ||||||    
T  2635695 cacatgcaattcctcatcacatccaagatccacg 2635662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 2644339 - 2644462
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||| | |   |||||||| |||| ||    
T  2644339 atcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaatattcatcactagttgcaaag 2644438  T
Q  116 acacacaagcaatccctcaccaca 139  Q
    ||||||||||||||||||| ||||    
T  2644439 acacacaagcaatccctcaacaca 2644462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 747179 - 747302
Alignment:
Q  74 ttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaccacatccaaggtccacgaatgatactcgtaatcaggta 173  Q
    ||||||||||||| || ||||||  ||||||||| |  |||||||||||||||||||||| || ||  ||||||||| |||| || |||  | |||||||    
T  747179 ttcataatccaaatattcataaatgtatcactagttcgagagacacacaagcaatccctcgccgcactcaaggtccatgaatcattctcagattcaggta 747278  T
Q  174 gcaaaagctgttgatatgactcct 197  Q
    ||||||| ||||||||||||||||    
T  747279 gcaaaagttgttgatatgactcct 747302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 7442957 - 7443072
Alignment:
Q  19 ttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagaca 118  Q
    |||||| ||||||||  | ||||| |||||||||||||||| ||||||||| |  ||||| ||||||||||  | ||||| |||||||||| || |||||    
T  7442957 ttgcattttaggaacactatacaacttagtccaagactcttgatttccatactccttcatgatccaaacattaaaaaacaaatcactagcttcatagaca 7443056  T
Q  119 cacaagcaatccctca 134  Q
    ||||||||||||||||    
T  7443057 cacaagcaatccctca 7443072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 7942559 - 7942425
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||| ||||| ||||||  ||||||||||| |||||||||||||||| ||||| |  |||||||||||||||||||  ||||| | ||||  |||| ||    
T  7942559 atcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatccaataacatcttactacgtgcaaag 7942460  T
Q  116 acacacaagcaatccctcaccacatccaaggtcca 150  Q
      |||||| ||||||||||||||  ||||||||||    
T  7942459 gtacacaaacaatccctcaccacccccaaggtcca 7942425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 9566094 - 9566150
Alignment:
Q  295 tgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttc 351  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  9566094 tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttc 9566150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 2644614 - 2644677
Alignment:
Q  288 cagaatatgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttc 351  Q
    |||||||||| ||||| | ||||||| |||||||||||||||||||||||||||| ||||||||    
T  2644614 cagaatatggaatgtcctgtattcttgtccaataatcagtccccaaagtattaaccctaacttc 2644677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 13498278 - 13498211
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatca 103  Q
    |||| ||||||||||||||||||||||||||||| |  ||||||||||||||||||| ||| ||||||    
T  13498278 tgtataatttagtccaagactctttatttccatattccttcataatccaaacatccacaaagatatca 13498211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 37753334 - 37753404
Alignment:
Q  28 aggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaaca 98  Q
    ||||||| || |||||||||||||||||||||| |||||||| |  | |||||||||||||||||||||||    
T  37753334 aggaaccttgcacaatttagtccaagactctttctttccatattcctccataatccaaacatccataaaca 37753404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 768329 - 768434
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctcaccac 138  Q
    ||||||||||||||||||||| |||||| || |  ||||||||||||||||  | |||||| |||||||   || | ||||||||||||||||||| |||    
T  768329 acaatttagtccaagactcttcatttccgtactcattcataatccaaacattaaaaaacatttcactagtgtcaaatacacacaagcaatccctcaacac 768428  T
Q  139 atccaa 144  Q
    | ||||    
T  768429 acccaa 768434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 2502203 - 2502106
Alignment:
Q  35 gtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccct 132  Q
    ||||||| |||||||||| |||| ||||||||||| |  ||||||||||||||||||  | |   ||||||| ||||| |||||||||||||||||||    
T  2502203 gtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatcccaatattcatcactacctgcaaagacacacaagcaatccct 2502106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 2475018 - 2474930
Alignment:
Q  172 tagcaaaagctgttgatatgactccttctttaaatcaagagaaagaatttttgaatcatcaagggtcaaccaattaaaagtgccactca 260  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||   ||||| ||||   | ||||||||| | |||||||||||    
T  2475018 tagcaaaagttgttgatatgactccttctctaaatcaagagaaagaatacgtgaataatcacttggcaaccaatttacagtgccactca 2474930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 43992012 - 43991944
Alignment:
Q  38 tacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcacta 106  Q
    |||||||| |||||||||||| |||||||||| |  ||||||||||||||||||| |||||||| ||||    
T  43992012 tacaatttggtccaagactctatatttccatattccttcataatccaaacatccaaaaacatatgacta 43991944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 2456302 - 2456235
Alignment:
Q  37 gtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcac 104  Q
    |||||||||||||||||| |||||||||||||| |  ||||||| ||||||||||  |||||||||||    
T  2456302 gtacaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaacatatcac 2456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 9594846 - 9594949
Alignment:
Q  240 accaattaaaagtgccactcaaaaatactccccgtctacaaatgctgccagaatatgggatgtcatctattcttctccaataatcagtccccaaagtatt 339  Q
    ||||||||| ||| ||||||| ||||||||| |||| | | |||| |  |  || ||||||||| ||||||||| ||||||||||||||||||||||||     
T  9594846 accaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcatgtgggatgtcctctattcttgtccaataatcagtccccaaagtata 9594945  T
Q  340 aaca 343  Q
    ||||    
T  9594946 aaca 9594949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 2501944 - 2501890
Alignment:
Q  297 ggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttc 351  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||    
T  2501944 ggatgtcctctatctttctccaataatcagtccccaaagtattaaccctaacttc 2501890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 14888609 - 14888679
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcacta 106  Q
    |||||||||||||| ||| |||||||||| |||| |  |||||||||||||| |||| |||||||||||||    
T  14888609 tgtacaatttagtctaaggctctttattttcatattcattcataatccaaacctccacaaacatatcacta 14888679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 7430533 - 7430594
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaac 97  Q
    |||||||||||||| |||||| |||||||||||| |  ||||||||||||||||||| ||||    
T  7430533 tgtacaatttagtctaagactttttatttccatacttcttcataatccaaacatccaaaaac 7430594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 9587182 - 9587251
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcact 105  Q
    |||||||||| ||||||| ||||||||||||||| |  |||||||||||||| |||| || |||||||||    
T  9587182 tgtacaattttgtccaaggctctttatttccatattccttcataatccaaacctccacaagcatatcact 9587251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 2442090 - 2442038
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatcc 91  Q
    |||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  2442090 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 2474898 - 2474838
Alignment:
Q  292 atatgggatgtcatctattcttctccaataatcagtcc-ccaaagtattaacactaacttc 351  Q
    |||||||||||| ||||||||| |||||||||||||||   ||||||||||||||||||||    
T  2474898 atatgggatgtcctctattcttgtccaataatcagtccttaaaagtattaacactaacttc 2474838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 4142117 - 4142185
Alignment:
Q  22 catgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||| |||||  ||| ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  4142117 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 7443256 - 7443308
Alignment:
Q  291 aatatgggatgtcatctattcttctccaataatcagtccccaaagtattaaca 343  Q
    |||| |||||||  ||||||||||||||||||||||||||||||| |||||||    
T  7443256 aataagggatgttctctattcttctccaataatcagtccccaaagcattaaca 7443308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 768615 - 768666
Alignment:
Q  292 atatgggatgtcatctattcttctccaataatcagtccccaaagtattaaca 343  Q
    |||||||||||| |||||||||||||||||||| || |||||||||| ||||    
T  768615 atatgggatgtcctctattcttctccaataatctgttcccaaagtataaaca 768666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 771497 - 771564
Alignment:
Q  37 gtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcac 104  Q
    |||||||||||||||||| ||| |||||||||| |  ||||||| ||||||||||  |||||||||||    
T  771497 gtacaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaacatatcac 771564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 803218 - 803269
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    |||| |||||||||||||||||||||||||| | |||||||| |||||||||    
T  803218 acaacttagtccaagactctttatttccatattctttcataacccaaacatc 803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 2631135 - 2631088
Alignment:
Q  291 aatatgggatgtcatctattcttctccaataatcagtccccaaagtat 338  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  2631135 aatatgggatgtcgtctattcttttccaataatcagtccctaaagtat 2631088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 2678399 - 2678450
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||| |||||||| |||||||| |||||||||| |||||||||    
T  2678399 acaatttagtccatgactctttttttccatattgtttcataacccaaacatc 2678450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 2696732 - 2696783
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    |||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  2696732 acaatttaatccaagactctttatttccatattccttcataatccaaacatc 2696783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 3754651 - 3754600
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  3754651 acaatttagtccaagactctttatttccatattccttcataacccaaacatc 3754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 4157944 - 4157995
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  4157944 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 4157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 746359 - 746413
Alignment:
Q  15 aatcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccata 69  Q
    ||||||| | |||||||||  |||||||||||||||||||||||| |||||||||    
T  746359 aatcttgtaggttaggaacaatgtacaatttagtccaagactcttgatttccata 746413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 989470 - 989396
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||| || ||  ||| |||||||||||||||||||||||||||| || | |||||| | |||||||||    
T  989470 atcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 989396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 1438048 - 1437980
Alignment:
Q  37 gtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcacta 106  Q
    |||||||||| ||||||| |||||||||||||| |  ||||||| ||||||||||| ||||||| |||||    
T  1438048 gtacaatttaatccaagagtctttatttccatattccttcataa-ccaaacatccagaaacataccacta 1437980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 2459326 - 2459277
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaaca 88  Q
    ||||||| ||||||||||||||||||||||| |  |||||||||||||||    
T  2459326 acaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 9608626 - 9608683
Alignment:
Q  294 atgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttc 351  Q
    |||||| ||| | ||| ||||||||||||||||| |||||||||| ||||||||||||    
T  9608626 atgggaagtcttgtatccttctccaataatcagtgcccaaagtatgaacactaacttc 9608683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 44001443 - 44001330
Alignment:
Q  238 caaccaattaaaagtgccactcaaaaatactccccgtctacaaatgctgccagaatatgggatgtcatctattcttctccaataatcagtccccaaagta 337  Q
    ||||||||||| ||||||||||| |||||||||  |||||   ||||| | ||||||||||| || ||  || || ||||||||| |||| |||| | ||    
T  44001443 caaccaattaacagtgccactcacaaatactcctggtctaggcatgctacgagaatatgggaagttatggatcctcctccaataaccagtacccatacta 44001344  T
Q  338 ttaacactaacttc 351  Q
    | ||||||||||||    
T  44001343 tgaacactaacttc 44001330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 754880 - 754936
Alignment:
Q  295 tgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaacttc 351  Q
    |||||| || ||||||||| ||||||||||||||||||| |||| ||||| ||||||    
T  754880 tgggatatcctctattcttgtccaataatcagtccccaatgtataaacacaaacttc 754936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 783782 - 783862
Alignment:
Q  22 catgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatc 102  Q
    ||||| |||||| || |||||||||||||| | || | |||||||||| |  ||||||||||||||||||| || ||||||    
T  783782 catgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatccacaagcatatc 783862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 1891063 - 1891115
Alignment:
Q  38 tacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||||||| |||||||||||||  |  |||||||||||||||||    
T  1891063 tacaatttagtccaagagtctttatttccatgttccttcataatccaaacatc 1891115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 9608341 - 9608409
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcac 104  Q
    |||| |||||||||||||| ||| |||||||||| |  ||||||| ||||||||| | |||||||||||    
T  9608341 tgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaacatatcac 9608409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 747352 - 747455
Alignment:
Q  238 caaccaattaaaagtgccactcaaaaatactccccgtctacaaatgctgccagaatatgggatgtcatctattcttctccaataatcagtccccaaagta 337  Q
    ||||||||||| |||| |||||| ||||| ||||  || ||| |||  |  | ||| ||||||| | ||||||||| |||||||||||| ||||||||||    
T  747352 caaccaattaacagtgtcactcacaaatattcccactccacatatgtcgtaataatgtgggatgccctctattcttttccaataatcagcccccaaagta 747451  T
Q  338 ttaa 341  Q
    ||||    
T  747452 ttaa 747455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 7334537 - 7334595
Alignment:
Q  292 atatgggatgtcatctattcttctccaataatcagtccccaaagtattaacactaactt 350  Q
    |||||| ||| ||||||||  | ||||||||||||| |||||||||| |||||||||||    
T  7334537 atatggaatgccatctatttgtttccaataatcagttcccaaagtataaacactaactt 7334595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 7443121 - 7443175
Alignment:
Q  165 aatcaggtagcaaaagctgttgatatgactccttctttaaatcaagagaaagaat 219  Q
    |||||||||| ||||| | |||||| |||||||| | ||||||||||||||||||    
T  7443121 aatcaggtaggaaaagtttttgatacgactccttttctaaatcaagagaaagaat 7443175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 679491 - 679540
Alignment:
Q  295 tgggatgtcatctattcttctccaataatcagtccccaaagtattaacac 344  Q
    ||||||| | ||||||||| |||||||||||  |||||||||||||||||    
T  679491 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacac 679540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 33038234 - 33038116
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||| ||||| ||||||   ||||||| |||||||||||| ||| |||||||| |  ||||||||||||||||| | |||||||||||||  |||| ||    
T  33038234 atcttccatgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaacatcaaaaaacatatcactacttgcaaag 33038135  T
Q  116 acacacaagcaatccctca 134  Q
    |  ||||||||||||||||    
T  33038134 atgcacaagcaatccctca 33038116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 33020387 - 33020269
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||| ||||| ||||||   ||||||| |||||||||||| |||||||||||| |  ||||||||||| ||||  | |||||||||||||  |||| ||    
T  33020387 atcttccatgtaaggaacacggtacaatctagtccaagactttttatttccatattccttcataatccacacattaaaaaacatatcactatttgcaaag 33020288  T
Q  116 acacacaagcaatccctca 134  Q
    |  ||||||||||||||||    
T  33020287 aagcacaagcaatccctca 33020269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 33026710 - 33026644
Alignment:
Q  37 gtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatca 103  Q
    ||||||| |||||||||||| |||||||||||| || ||||||| ||||||||||| ||||||||||    
T  33026710 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatca 33026644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 34560900 - 34560978
Alignment:
Q  22 catgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacata 100  Q
    ||||||||||||  | ||||||||||||||||| | |||||||||||| | |||||||||  ||||||||||| |||||    
T  34560900 catgttaggaacactatacaatttagtccaagattttttatttccatattctttcataattgaaacatccatagacata 34560978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 36577417 - 36577366
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    |||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  36577417 acaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 89217 - 89082
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagag 115  Q
    ||||| ||||| ||||||  |||||||||||||||||||||||||||||||||| |  ||||||| ||||| ||| | ||| |||||||||  || | ||    
T  89217 atcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaatatatcactacttgtaaag 89118  T
Q  116 acacacaagcaatccctcaccacatccaaggtccac 151  Q
    |  |||||||||||| | | |||  |||||||||||    
T  89117 atgcacaagcaatccgttaacacccccaaggtccac 89082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 23766862 - 23766913
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  23766862 acaatttagtccaagactctttatttccatattctttcataatccaaacatc 23766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 23816710 - 23816761
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  23816710 acaatttagtccaagactctttatttccatattctttcataatccaaacatc 23816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 20293049 - 20292951
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctca 134  Q
    |||| ||||||||||||||||||||| ||||||| |  ||||||||||||||||||| |  || |||||||| | || |||  ||||||||||||||||    
T  20293049 tgtataatttagtccaagactctttaattccatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20292951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 20301497 - 20301399
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctca 134  Q
    |||| ||||||||||||||||||||| || |||| |  ||||||||||||||||||| |  || |||||||| | || |||  ||||||||||||||||    
T  20301497 tgtataatttagtccaagactctttaattgcatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20301399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 20305910 - 20305812
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctca 134  Q
    |||| ||||||||||||||||||||| ||||||| |  ||||||||||| ||||||| |  || |||||||| | || |||  ||||||||||||||||    
T  20305910 tgtataatttagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20305812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 20310314 - 20310216
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcagagacacacaagcaatccctca 134  Q
    |||| ||||||||||||||||||||| ||||||| |  ||||||||||| ||||||| |  || |||||||| | || |||  ||||||||||||||||    
T  20310314 tgtataatttagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20310216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 11081864 - 11081813
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  11081864 acaatttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 23769646 - 23769697
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||||||| ||||||| ||||| |  |||||||||||||||||    
T  23769646 acaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23769697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 23819494 - 23819545
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    ||||||||||||||||| ||||||| ||||| |  |||||||||||||||||    
T  23819494 acaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23819545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 20292757 - 20292717
Alignment:
Q  307 tattcttctccaataatcagtccccaaagtattaacactaa 347  Q
    ||||||||||||||| ||||| |||||||||| ||||||||    
T  20292757 tattcttctccaatattcagtacccaaagtatgaacactaa 20292717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 24417483 - 24417536
Alignment:
Q  36 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacat 89  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  24417483 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 370785 - 370842
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaa 96  Q
    |||||||||||||||| |||||||||||||| |  ||||||| ||||||  |||||||    
T  370785 acaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaa 370842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 1459541 - 1459594
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatcca 92  Q
    |||||||||||||||| |||||||||||| | | |||||||| ||||| |||||    
T  1459541 acaatttagtccaagattctttatttccaaaatctttcataacccaaatatcca 1459594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 1470923 - 1470976
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatcca 92  Q
    ||||||||| |||||| |||||||||||||| | |||||||| ||||| |||||    
T  1470923 acaatttagaccaagaatctttatttccataatctttcataacccaaatatcca 1470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 51381455 - 51381502
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaa 86  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  51381455 acaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 51381594 - 51381640
Alignment:
Q  169 aggtagcaaaagctgttgatatgactccttctttaaatcaagagaaa 215  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||||||    
T  51381594 aggttgcaaaagctttcgatatgactccttgtttaaatcaagagaaa 51381640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 20016162 - 20016232
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaa 86  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||| | ||||||| |  ||||| |||||||    
T  20016162 atcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 20019749 - 20019823
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 90  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||| | ||||||| |  ||||| | |||||||||    
T  20019749 atcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 20019823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 32330 - 32386
Alignment:
Q  40 caatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaa 96  Q
    ||||||| ||||||| |||||||||||||| |  ||||||| ||||||||| |||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacatcaataaa 32386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 1078160 - 1078212
Alignment:
Q  39 acaatttagtccaagactctttatttccatagtgtttcataatccaaacatcc 91  Q
    ||||||||||||| |||||| |||||||||| |  ||||||| ||||||||||    
T  1078160 acaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 39299051 - 39298967
Alignment:
Q  16 atcttgcatgttaggaaccgtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacata 100  Q
    ||||| ||||| ||||||  |||| ||||||||||| ||||||||||||||| | |  |||| || ||||||||| | |||||||    
T  39299051 atcttccatgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatcaaaaaacata 39298967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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