View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8883_low_8 (Length: 319)
Name: NF8883_low_8
Description: NF8883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8883_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 49688279 - 49688582
Alignment:
| Q |
1 |
gaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49688279 |
gaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatg |
49688378 |
T |
|
| Q |
101 |
atgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaaccgatccttcacaccgataagcaattgataaagtggtggaaatgctgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
49688379 |
atgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaaccgatccttcacaccgacaagcaatgcataaagtggtggaaatgctgga |
49688478 |
T |
|
| Q |
201 |
agggagccttgaagtgctggaaataccacccaaaccctttttgtcttctccttctacatcttcgatccatttatcatctgaaacattgtaatttgtgtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49688479 |
agggagccttgaagtgctggaaataccacccaaaccctttttgtcttctccttctacatcttcgatccatttatcatctgaaacattgtaatttgtgtgg |
49688578 |
T |
|
| Q |
301 |
atat |
304 |
Q |
| |
|
|||| |
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|
| T |
49688579 |
atat |
49688582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 49683380 - 49683684
Alignment:
| Q |
1 |
gaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatg |
100 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
49683380 |
gaagtggattgttctagcgagttatattttccacattggatctacaagcgtcttgaattgaatcaagatcttggactcaagtgtattaaaaatgaaattg |
49683479 |
T |
|
| Q |
101 |
atgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaaccgatccttcacaccgataagcaattgataaagtggtggaaatgctgga |
200 |
Q |
| |
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||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||| ||| |||||| ||||||||||||||||||| || |
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| T |
49683480 |
atgaagagatggtaagaaagatgacaatggtgagtttatggtgcataccaaccgacccttcacatcgaccagcaatgaataaagtggtggaaatgctaga |
49683579 |
T |
|
| Q |
201 |
agggagccttgaagtgctggaaataccacccaaaccctttttgtcttctccttctacatcttcgatccatttatcatctgaaacattgtaatttgtgtgg |
300 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||||||||||||| |||||||| | ||||| |||| ||||||||||||||||| | |||||||||||| |
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| T |
49683580 |
agggagccttcaagtgctagaaataccacccaaaccctttttgtcctctccttcaagatctttgatcaatttatcatctgaaacactttaatttgtgtgg |
49683679 |
T |
|
| Q |
301 |
atatt |
305 |
Q |
| |
|
||||| |
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|
| T |
49683680 |
atatt |
49683684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 49710990 - 49711294
Alignment:
| Q |
1 |
gaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatg |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
49710990 |
gaagttgattgttctagcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaagagtattaaaaatgaaaatg |
49711089 |
T |
|
| Q |
101 |
atgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaaccgatccttcacaccgataagcaattgataaagtggtggaaatgctgga |
200 |
Q |
| |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| || ||| |||||| |||||||||||||||||||||| |
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|
| T |
49711090 |
atgaagaaatggtcagaaaaatgtcagtggtgagtttatggtgcatacaaaccgacccttctcatcgaccagcaatgcataaagtggtggaaatgctgga |
49711189 |
T |
|
| Q |
201 |
agggagccttgaagtgctggaaataccacccaaaccctttttgtcttctccttctacatcttcgatccatttatcatctgaaacattgtaatttgtgtgg |
300 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||| |||| | ||| |
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|
| T |
49711190 |
agggagtcttcaaatgctggaaataccacccaaaccctttttgtcttctccttcaacatctccaatccatttatcatctgaaatattgtgatttttatgg |
49711289 |
T |
|
| Q |
301 |
atatt |
305 |
Q |
| |
|
||||| |
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|
| T |
49711290 |
atatt |
49711294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 307
Target Start/End: Original strand, 49215668 - 49215951
Alignment:
| Q |
24 |
atattttccacattggatttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatg |
123 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
49215668 |
atattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaggtgtattaaaaatgaaattgatgaagaaatggtaagaaaaatg |
49215767 |
T |
|
| Q |
124 |
acagtggtgagtttatggtgcatacaaaccgatccttcacaccgataagcaattgataaagtggtggaaatgctggaagggagccttgaagtgctggaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| | ||| |||||| ||||||||||||||||| |||||||||||||| ||||||| |||| |
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|
| T |
49215768 |
acagtggtgagtttatggtgcatacaaacagaccctttgaatcgaccagcaatgcataaagtggtggaaatgttggaagggagccttcaagtgcttgaaa |
49215867 |
T |
|
| Q |
224 |
taccacccaaaccctttttgtcttctccttctacatcttcgatccatttatcatctgaaacattgtaatttgtgtggatattga |
307 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| | ||| || |||||||||||| |||||||||||||||||||||| |
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| T |
49215868 |
taccacccaaaccctttttgtcttctccttcaacatcacctatcaatctatcatctgaaatgttgtaatttgtgtggatattga |
49215951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 49714630 - 49714912
Alignment:
| Q |
1 |
gaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatg |
100 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| | || |||||||||||||| || |
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|
| T |
49714630 |
gaagttgattgttccagcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatcttgaactgaggtgtattaaaaatgaaattg |
49714729 |
T |
|
| Q |
101 |
atgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaaccgatccttcacaccgataagcaattgataaagtggtggaaatgctgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| || ||| || ||| ||||||||||||||||| |||| |
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|
| T |
49714730 |
atgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacgaactgacccttcgcatcgaccaggaatgcataaagtggtggaaatgttgga |
49714829 |
T |
|
| Q |
201 |
agggagccttgaagtgctggaaataccacccaaaccctttttgtcttctccttctacatcttcgatccatttatcatctgaaa |
283 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |
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|
| T |
49714830 |
agggagccttcaagtgctggaaataccacccaaaccctttttgtcgtctccttcaacatcttcagctcatttatcatctgaaa |
49714912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 49728880 - 49728912
Alignment:
| Q |
25 |
tattttccacattggatttacaagcgtcttgaa |
57 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
49728880 |
tattttccacaatggatttacaagcgtcttgaa |
49728912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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