View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8884_high_3 (Length: 251)
Name: NF8884_high_3
Description: NF8884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8884_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2590731 - 2590969
Alignment:
| Q |
1 |
cataggaagttttgtcaaaaggaatgttagtgacacggggaccatatccagcaccattagcacggggtcttttgggttgaggctttgtcgcttcagtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2590731 |
cataggaagttttgtcaaaaggaatgttagtgacacggggaccatatccagcaccattagcacggggtcttttgggttgaggctttgtcgcttcagtttc |
2590830 |
T |
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| Q |
101 |
cctcttcttatcggccttggccttctctagttggatcattcgtttctggagagaatcgattggatactgctcctcaagtttatgttcttcaatgcacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2590831 |
cctcttcttatcggccttggccttctctagttggatcattcgtttctggagagaatcgattggatactgctcctcaagtttatgttcttcaatgcatttg |
2590930 |
T |
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| Q |
201 |
attacggccttaagagcaaacagctctctttcattaaca |
239 |
Q |
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| T |
2590931 |
attacggccttaagagcaaacagctctctttcattaaca |
2590969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2584401 - 2584638
Alignment:
| Q |
1 |
cataggaagttttgtcaaaaggaatgttagtgacacggggaccatatccagcaccattagcacggggtcttttgggttgaggctttgtcgcttcagtttc |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||| ||||| || |||||||||||||||||||||||||| |
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| T |
2584401 |
cataggaagttttgtcagaaggaatgttagtgacacgaggaccatatcccacaccgttagcacgaggtctctttggttgaggctttgtcgcttcagtttc |
2584500 |
T |
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| Q |
101 |
cctcttcttatcggccttggccttctctagttggatcattcgtttctggagagaatcgattggatactgctcctcaagtttatgttcttcaatgcacttg |
200 |
Q |
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|||||| || ||||| || |||||||||||||||| | ||||||| ||||| ||| | ||||||||||| ||||||||| ||||||||||||||||| |
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| T |
2584501 |
cctctttttgtcggctttcgccttctctagttggacaactcgtttcatgagaggatctagaggatactgctcatcaagtttacgttcttcaatgcacttg |
2584600 |
T |
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| Q |
201 |
attacggccttaagagcaaacagctctctttcattaac |
238 |
Q |
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||||| || ||| |||| | ||||| | ||||||||| |
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| T |
2584601 |
attactgctttatgagcgattagctcccgttcattaac |
2584638 |
T |
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