View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8884_low_2 (Length: 345)
Name: NF8884_low_2
Description: NF8884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8884_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 11584994 - 11584680
Alignment:
| Q |
20 |
caatggttattgtgatcatgatatcaatannnnnnn--cattagtatcaagaatattattgtagtcgaaatagttatattttattgtgaggttaccacag |
117 |
Q |
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| T |
11584994 |
caatggttattgtggtcatgatatcaatatttttttttcattagtatcaagaatattattgtagtcgaaatagttatattttattgtgaggttaccccag |
11584895 |
T |
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| Q |
118 |
tttaaagtatacttaaatacattccttgacatggtttatcatatatgctctaggtcaatatggattgcaatggtgggacgagtgatcgtgggacgagtga |
217 |
Q |
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| T |
11584894 |
tttaaagtatacttaaatacattccttgacatggtttatcatatatgctctaggtcaatatggattgcaatggtgggacgagtgatcgtgggacgagtga |
11584795 |
T |
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| Q |
218 |
tcagaatgagaatgattgtttaccgtatcctggagtcttgttttggcaattgagggagccgtgttggtgcgtcacttatcaactaaagtcgctttgtata |
317 |
Q |
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| T |
11584794 |
tcagaatgagaatgattgtttaccgtaccctggagtcttgttttggcaattgagggagccatgttggtgcgtcacttatcaactaaagtcgctttgtata |
11584695 |
T |
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| Q |
318 |
aggggatacacaggt |
332 |
Q |
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| T |
11584694 |
aggggatacacaggt |
11584680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 215 - 332
Target Start/End: Original strand, 30373666 - 30373783
Alignment:
| Q |
215 |
tgatcagaatgagaatgattgtttaccgtatcctggagtcttgttttggcaattgagggagccgtgttggtgcgtcacttatcaactaaagtcgctttgt |
314 |
Q |
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| T |
30373666 |
tgatcagaatgacaatgcttgtttaccgtatcctggagtcttgttttgggaaaaaagggagccatgtcggtgtgtcatttaccaactaaagtctctttgt |
30373765 |
T |
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| Q |
315 |
ataaggggatacacaggt |
332 |
Q |
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| T |
30373766 |
ataaggggatatacaggt |
30373783 |
T |
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