View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8884_low_4 (Length: 253)
Name: NF8884_low_4
Description: NF8884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8884_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 12849257 - 12849464
Alignment:
| Q |
13 |
agacgttgtgtgggtttccagttgttgatgcgaagcttcaacttaatcatttgcataatctgtcataagatatttctcacacaagaagatctccctatgg |
112 |
Q |
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| T |
12849257 |
agacgttgtgtgggtttgcagttgttgatgcgaagcttcaacttaatcatttgcataatctgtcatgagatatttctcacacaagaagatctccctatgg |
12849356 |
T |
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| Q |
113 |
tttgtcatgattataaaaatcttaattgatgtcccttaacttttacaacacaatttcttgattttgatttggtcttttgataggaaaacatattgtagca |
212 |
Q |
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| T |
12849357 |
tttatgatgattataaaaatcttaattgatgtcccttaacttttacaacacaatttcttgattttcattaggtcttttgacaggaaaagacattgtagca |
12849456 |
T |
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| Q |
213 |
tatgacta |
220 |
Q |
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| T |
12849457 |
tattacta |
12849464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 12099068 - 12098911
Alignment:
| Q |
13 |
agacgttgtgtgggtttccagttgttgatgcgaagcttcaacttaatcatttgcataatctgtcataagatatttctcacacaagaagatctccctatgg |
112 |
Q |
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| T |
12099068 |
agacgttgtgtgggtttgcagttgttgatgcgaagcttcaacttaatcatttgcataatctatcatgagatatttctcacacaagaagatctccctatgg |
12098969 |
T |
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| Q |
113 |
tttgtcatgattataaaaatcttaattgatgtcccttaacttttacaacacaatttctt |
171 |
Q |
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| T |
12098968 |
tttgtcatgattataaaatttttaattgatgt-ccttaacttttacaacacaatttctt |
12098911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 15448367 - 15448285
Alignment:
| Q |
142 |
tgtcccttaacttttacaacacaatttcttgattttgatttggtcttttgataggaaaacatattgtagcatatgactagtca |
224 |
Q |
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| T |
15448367 |
tgtcccataacttttacatcacaatttattgattttgatttgttcttttgacaggagaagatattgatgcatatgactagtca |
15448285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 12098902 - 12098865
Alignment:
| Q |
202 |
atattgtagcatatgactagtcatccacatgagaagga |
239 |
Q |
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| T |
12098902 |
atattgtagcatatgactagtcatccacaagagaagga |
12098865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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