View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8884_low_6 (Length: 246)
Name: NF8884_low_6
Description: NF8884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8884_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 21444760 - 21444987
Alignment:
| Q |
1 |
catgttactagcaaacaacaccaatttcgaaatttacatagtttaaaaccagtgtgctaaaacaatgatatggtgagtgcaagtcagaaacaaaattgtc |
100 |
Q |
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| T |
21444760 |
catgttactagcaaacaacaccaatttcgaaatttacatagtttaaaaccagtgtgctaaaacaatgatatggtgagtgcaagtcagaaacaaaattgtc |
21444859 |
T |
|
| Q |
101 |
aaataatgttgaaaccataatgtgtctaaattatatattctttagaacaaagcaaaaaccaaaatggagaccagtataacaataagatatattttttgga |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21444860 |
aaataatgatgaaaccataatgtgtctaaattatatattctttagaacaaagcaaaaaccaaaatggaaaccagtataacaataagatatattttttgga |
21444959 |
T |
|
| Q |
201 |
tattattcatgcaaaaacgataccttaa |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
21444960 |
tattattcatgcaaaaacgataccttaa |
21444987 |
T |
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