View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8884_low_8 (Length: 217)
Name: NF8884_low_8
Description: NF8884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8884_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 14555683 - 14555808
Alignment:
| Q |
74 |
atgtcaacctctatgaaagctctgaacgacgtcaacccatatgagggctctgaacgaaattaaaaacgacacctcttatatgagcactaaacgtacgaca |
173 |
Q |
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| T |
14555683 |
atgtcaacccctatgagagctctgaacaacgtcaacccatataagagctctgaacgaaattaaaaacgacacctcttatatgagttctgaacgtacgaca |
14555782 |
T |
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| Q |
174 |
caacgtcaacctccaaaggataccac |
199 |
Q |
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| T |
14555783 |
caacgtcaacctccaaaggataccac |
14555808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 14555455 - 14555581
Alignment:
| Q |
2 |
aacaagaaacgtcaactcctatgagagctctgaacgacgtcaacccctatgagggctctgaacgaacttgaaatgtcaacctctatgaaagctctgaacg |
101 |
Q |
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| T |
14555455 |
aacaagaaatgtcaactcctatgagagctctgaacgatgtcaacccctgtgagggctctggaagaactagaaacgtcaactcctatgagagctctgaacg |
14555554 |
T |
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| Q |
102 |
acgtcaacccatatgagggctctgaac |
128 |
Q |
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| T |
14555555 |
gcgtcaacccctatgagggctctgaac |
14555581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 14555523 - 14555646
Alignment:
| Q |
6 |
agaaacgtcaactcctatgagagctctgaacgacgtcaacccctatgagggctctgaacgaacttgaaatgtcaacctctatgaaagctctgaacgacgt |
105 |
Q |
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| T |
14555523 |
agaaacgtcaactcctatgagagctctgaacggcgtcaacccctatgagggctctgaacaaacaagaaacgtcaactcctatgagagctctgaacagcgt |
14555622 |
T |
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| Q |
106 |
caacccatatgagggctctgaacg |
129 |
Q |
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| T |
14555623 |
caacccttatgaaggctctgaacg |
14555646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 14555582 - 14555709
Alignment:
| Q |
1 |
aaacaagaaacgtcaactcctatgagagctctgaacgacgtcaacccctatgagggctctgaacgaacttgaaatgtcaacctctatgaaagctctgaac |
100 |
Q |
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| T |
14555582 |
aaacaagaaacgtcaactcctatgagagctctgaacagcgtcaacccttatgaaggctctgaacggacaagaaacgtcaactcctatgagagctctgaac |
14555681 |
T |
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| Q |
101 |
gacgtcaacccatatgagggctctgaac |
128 |
Q |
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| T |
14555682 |
gatgtcaacccctatgagagctctgaac |
14555709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 14555430 - 14555514
Alignment:
| Q |
41 |
tcaacccctatgagggctctgaacgaacttgaaatgtcaacctctatgaaagctctgaacgacgtcaacccatatgagggctctg |
125 |
Q |
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| T |
14555430 |
tcaacccctatgtgggctctgaacgaacaagaaatgtcaactcctatgagagctctgaacgatgtcaacccctgtgagggctctg |
14555514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 14555685 - 14555740
Alignment:
| Q |
12 |
gtcaactcctatgagagctctgaacgacgtcaacccctatgagggctctgaacgaa |
67 |
Q |
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| T |
14555685 |
gtcaacccctatgagagctctgaacaacgtcaacccatataagagctctgaacgaa |
14555740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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