View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8885_high_12 (Length: 259)
Name: NF8885_high_12
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8885_high_12 |
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| [»] chr2 (7 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 2321697 - 2321433
Alignment:
| Q |
1 |
ctagagtggttcacacaacaacattacatactccaaatcgttacacataac---------ctataccctaggagaaatatgaacttgcaatggatttttc |
91 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2321697 |
ctagagtggttcacacaaca---ttacatactccaaatcgttacacataacacacataatctataccctaggagaaatatgaacttgcaatggatttttc |
2321601 |
T |
|
| Q |
92 |
atcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattcca |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321600 |
atcaccatagtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattcca |
2321501 |
T |
|
| Q |
192 |
aatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatc |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321500 |
aatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatc |
2321433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 2294385 - 2294118
Alignment:
| Q |
1 |
ctagagtggttcacacaacaacattacatactccaaatcgttacacataac---------ctataccctaggagaaatatgaacttgcaatggatttttc |
91 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
2294385 |
ctagggtggttcacacaacaacattacatactccacatcgttacatataacacacataatctatatcctaggagaaatatgaacttgcaatggatttttc |
2294286 |
T |
|
| Q |
92 |
atcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattcca |
191 |
Q |
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|||||||| |||||||| | | |||||| |||||||||||| |||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2294285 |
atcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattcca |
2294186 |
T |
|
| Q |
192 |
aatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatc |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2294185 |
aatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatc |
2294118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 43 - 259
Target Start/End: Complemental strand, 2310665 - 2310449
Alignment:
| Q |
43 |
acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctcc |
142 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||| |||||||||||| |||||||| |
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| T |
2310665 |
acacataatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctct |
2310566 |
T |
|
| Q |
143 |
ggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaa |
242 |
Q |
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|||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2310565 |
ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaa |
2310466 |
T |
|
| Q |
243 |
acggcatcatctttatc |
259 |
Q |
| |
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||||||||||||||||| |
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| T |
2310465 |
acggcatcatctttatc |
2310449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 45 - 259
Target Start/End: Complemental strand, 2303945 - 2303731
Alignment:
| Q |
45 |
acataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccgg |
144 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||| || |
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| T |
2303945 |
acataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctgg |
2303846 |
T |
|
| Q |
145 |
aagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaac |
244 |
Q |
| |
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||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||| ||||| |
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| T |
2303845 |
aagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaac |
2303746 |
T |
|
| Q |
245 |
ggcatcatctttatc |
259 |
Q |
| |
|
||||||||||||||| |
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| T |
2303745 |
ggcatcatctttatc |
2303731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 2327502 - 2327290
Alignment:
| Q |
43 |
acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctcc |
142 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||| |||||| |
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| T |
2327502 |
acacataatctatattctatgagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctcc |
2327403 |
T |
|
| Q |
143 |
ggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaa |
242 |
Q |
| |
|
|||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||| |
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| T |
2327402 |
ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaa |
2327303 |
T |
|
| Q |
243 |
acggcatcatctt |
255 |
Q |
| |
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||||||||||||| |
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| T |
2327302 |
acggcatcatctt |
2327290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 44 - 259
Target Start/End: Complemental strand, 2351522 - 2351307
Alignment:
| Q |
44 |
cacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccg |
143 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| || || || | |
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|
| T |
2351522 |
cacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctg |
2351423 |
T |
|
| Q |
144 |
gaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaa |
243 |
Q |
| |
|
||| || ||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||| ||| | ||||| |
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|
| T |
2351422 |
gaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaa |
2351323 |
T |
|
| Q |
244 |
cggcatcatctttatc |
259 |
Q |
| |
|
||||||||||||||| |
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|
| T |
2351322 |
tggcatcatctttatc |
2351307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 259
Target Start/End: Complemental strand, 2331198 - 2331001
Alignment:
| Q |
62 |
ggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaat |
161 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| |||||||||||||| | ||| || ||||||||||| | || ||||| |||| || ||||| ||||| |
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|
| T |
2331198 |
ggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaat |
2331099 |
T |
|
| Q |
162 |
tccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatc |
259 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
2331098 |
tccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatc |
2331001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 41127517 - 41127313
Alignment:
| Q |
58 |
cctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccg---ccctccggaagctgccaa |
154 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||| || ||||| ||| || |||| |
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|
| T |
41127517 |
cctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttccaa |
41127418 |
T |
|
| Q |
155 |
ttgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatct |
254 |
Q |
| |
|
|| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||| |
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|
| T |
41127417 |
ttaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatct |
41127318 |
T |
|
| Q |
255 |
ttatc |
259 |
Q |
| |
|
||||| |
|
|
| T |
41127317 |
ttatc |
41127313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 26507129 - 26507056
Alignment:
| Q |
58 |
cctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacat |
131 |
Q |
| |
|
||||||||| || ||| ||| |||||||| ||||||||||||||| ||||| | |||||| ||||||||||||| |
|
|
| T |
26507129 |
cctaggagatatttgagcttccaatggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacat |
26507056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 26494992 - 26494898
Alignment:
| Q |
165 |
aaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatc |
259 |
Q |
| |
|
||||||| ||||| ||||| ||||| |||||||||| || || ||| | |||||||| ||||| || |||||||||||||||||||||||| |
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|
| T |
26494992 |
aaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatc |
26494898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 26506966 - 26506925
Alignment:
| Q |
218 |
ggacaaattctccttccagctccaaacggcatcatctttatc |
259 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
26506966 |
ggacaaatcctccttcctgctccaaatggcatcatctttatc |
26506925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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