View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8885_high_4 (Length: 359)
Name: NF8885_high_4
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8885_high_4 |
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| [»] scaffold0495 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0495 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 3885 - 4223
Alignment:
| Q |
1 |
tgttggagtctttgtcttaaagcatgcatgtcttgacccagatgaatttccgaaacttaactcccttnnnnnnnntctataagagaaaaatcacgctgtc |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| | |||| |
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| T |
3885 |
tgttggagtctttatcttaaagcatgcatgtcttgacccagatgaatttccgaaacttaactctcttaaaaaaaatctataagagagaaatcatgttgtc |
3984 |
T |
|
| Q |
101 |
acaaaactattttttaaagggaaaaattcatctcttttcactagataacaagtcatgaatacaaggcggttcatcaatatatataattaggagctagctt |
200 |
Q |
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| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
3985 |
ataaaactatttattaaagggaaaaattcatctcttttcactagataacaaatcatgaatacaaggcggttcatcaatagata--attgggagctagctt |
4082 |
T |
|
| Q |
201 |
ctgatgaggttgcgtgtgctgattcatgaaccacctcatttgcttgccttcagctaaacactaccttagagttggtaaattggatactggtagttgtcga |
300 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
4083 |
ctgatggggttgcgtgtactgattcatgaaccacctcatttgcttgccttcagttaaacactaccttagagttggtaaattgggtgctagtagttgtcga |
4182 |
T |
|
| Q |
301 |
caatgactaataatacttctaaaatcattgttactactatt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
4183 |
caatgactaataatacttctaaaatcattgttactactatt |
4223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 10227166 - 10227504
Alignment:
| Q |
1 |
tgttggagtctttgtcttaaagcatgcatgtcttgacccagatgaatttccgaaacttaactcccttnnnnnnnntctataagagaaaaatcacgctgtc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| | |||| |
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| T |
10227166 |
tgttggagtctttatcttaaagcatgcatgtcttgacccagatgaatttccgaaacttaactctcttaaaaaaaatctataagagagaaatcatgttgtc |
10227265 |
T |
|
| Q |
101 |
acaaaactattttttaaagggaaaaattcatctcttttcactagataacaagtcatgaatacaaggcggttcatcaatatatataattaggagctagctt |
200 |
Q |
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| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
10227266 |
ataaaactatttattaaagggaaaaattcatctcttttcactagataacaaatcatgaatacaaggcggttcatcaatagata--attgggagctagctt |
10227363 |
T |
|
| Q |
201 |
ctgatgaggttgcgtgtgctgattcatgaaccacctcatttgcttgccttcagctaaacactaccttagagttggtaaattggatactggtagttgtcga |
300 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
10227364 |
ctgatggggttgcgtgtactgattcatgaaccacctcatttgcttgccttcagttaaacactaccttagagttggtaaattgggtgctagtagttgtcga |
10227463 |
T |
|
| Q |
301 |
caatgactaataatacttctaaaatcattgttactactatt |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
10227464 |
caatgactaataatacttctaaaatcattgttactactatt |
10227504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 339
Target Start/End: Complemental strand, 20815463 - 20815252
Alignment:
| Q |
126 |
attcatctcttttcactagataacaagtcatgaatacaaggcggttcatcaatatatataattaggagctagcttctgatgaggttgcgtgtgctgattc |
225 |
Q |
| |
|
||||||||| |||| ||||||||||| ||| ||||||||||||| |||||||| | |||| ||||||||||||| || |||| |||||| |||| |
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| T |
20815463 |
attcatctcaattcattagataacaagacattaatacaaggcggtacatcaataaa---aattgggagctagcttctaatagggttatttgtgctcattc |
20815367 |
T |
|
| Q |
226 |
atgaaccacctcatttgcttgccttcagctaaacactaccttagagttggtaaattggatactg-gtagttgtcgacaatgactaataatacttctaaaa |
324 |
Q |
| |
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|||| ||||| |||||||||||||| |||||| ||| |||| | |||||||||||| | || |||||||||||||||||||||||||||||| ||| |
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| T |
20815366 |
atgagtcaccttatttgcttgccttcggctaaaatctatcttaaaattggtaaattgggttctaagtagttgtcgacaatgactaataatacttccgaaa |
20815267 |
T |
|
| Q |
325 |
tcattgttactacta |
339 |
Q |
| |
|
|| |||||||||||| |
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| T |
20815266 |
tctttgttactacta |
20815252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 183 - 341
Target Start/End: Original strand, 53459805 - 53459964
Alignment:
| Q |
183 |
ataattaggagctagcttctgatgaggttgcgtgtgctgattcatgaaccacctcatttgcttgccttcagctaaacactaccttagagttggtaaattg |
282 |
Q |
| |
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||||||| |||||||||||| || ||||| ||||||||||| || ||||||||||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
53459805 |
ataattaagagctagcttctattggagttgccagtgctgattcacgagtcacctcatttgcttgtctacagctaaactctaccttagagttggtaaattg |
53459904 |
T |
|
| Q |
283 |
---gatactggtagttgtcgacaatgactaataatacttctaaaatcattgttactactatt |
341 |
Q |
| |
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| || |||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |
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| T |
53459905 |
agcgtta--agtagttgtcgacaatgactagtaatacttccaaaatcagtgttactactatt |
53459964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 341
Target Start/End: Complemental strand, 81290 - 81073
Alignment:
| Q |
123 |
aaaattcatctcttttcactagataacaagtcatgaatacaaggcggttcatcaatatatataattaggagctagcttctgatgaggttgcgtgtgctga |
222 |
Q |
| |
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|||||| | ||| ||||| ||||||| ||||| | |||||| | ||| |||||||||||| ||||||||||||||||| |||||||||| || || | |
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| T |
81290 |
aaaattaagctcatttcattagataataagtcgttgatacaatgtggtacatcaatatata--attaggagctagcttctaatgaggttgcctgcactaa |
81193 |
T |
|
| Q |
223 |
ttcatgaaccacctcatttgcttgccttcagctaaacactaccttagagttggtaaattggatact-ggtagttgtcgacaatgactaataatacttcta |
321 |
Q |
| |
|
||||||| ||| |||||||| ||| ||||||| ||||||||||||||||||||| |||| | || ||||||||||| ||| |||| |||| | |
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| T |
81192 |
ttcatgagttacccaatttgcttacctctggctaaactttaccttagagttggtaaattgagtactaagcagctgtcgacaatggctagtaatgcttcca |
81093 |
T |
|
| Q |
322 |
aaatcattgttactactatt |
341 |
Q |
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|||||| |||| |||||||| |
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| T |
81092 |
aaatcagtgttgctactatt |
81073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 47648407 - 47648335
Alignment:
| Q |
266 |
ttagagttggtaaattggatactggtagttgtcgacaatgactaataatacttctaaaatcattgttactact |
338 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
47648407 |
ttagagttggtaaattggatgataatagttgtcgacaatgactagtaatacttccaaaatcattgttgctact |
47648335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 341
Target Start/End: Original strand, 35861285 - 35861405
Alignment:
| Q |
222 |
attcatgaaccacctcatttgcttgccttcagctaaacactaccttagagttggtaaattggatactg-gtagttgtcgacaatgactaataatacttct |
320 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||| || ||||| ||||||||||||||| |||| |||| |||||||||||| ||||||||||| | |
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| T |
35861285 |
attcatgagtcaccccatttgcttgcctatggctacaccctaccatagagttggtaaattaactactaagtagctgtcgacaatgagtaataatacttgt |
35861384 |
T |
|
| Q |
321 |
aaaatcattgttactactatt |
341 |
Q |
| |
|
||||| | ||||||||||||| |
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| T |
35861385 |
aaaattagtgttactactatt |
35861405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 3869816 - 3869863
Alignment:
| Q |
232 |
cacctcatttgcttgccttcagctaaacactaccttagagttggtaaa |
279 |
Q |
| |
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|||||||||||||||||||| ||||||| ||| |||||||||| |||| |
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|
| T |
3869816 |
cacctcatttgcttgccttcggctaaactctatcttagagttgctaaa |
3869863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 18225890 - 18225838
Alignment:
| Q |
222 |
attcatgaaccacctcatttgcttgccttcagctaaacactaccttagagttg |
274 |
Q |
| |
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|||||||| | |||||||||||||| |||||||||||| | | |||||||||| |
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| T |
18225890 |
attcatgagcgacctcatttgcttgacttcagctaaactccatcttagagttg |
18225838 |
T |
|
Back To:
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