View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8885_high_9 (Length: 293)
Name: NF8885_high_9
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8885_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 43 - 278
Target Start/End: Original strand, 46695320 - 46695555
Alignment:
| Q |
43 |
cctaagcagtaagtaagcataactcctattgtgacaaaagaaaaagaaaattgtcctcattctgatgcagcaaattaggaatctatcatcaacaactaca |
142 |
Q |
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| T |
46695320 |
cctaagcagtaagtaagcataactcctattgtgacaaaagaaaaagaaaattgtcctcattctgatgcagtaaattaggaatctatcatcaacaactaca |
46695419 |
T |
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| Q |
143 |
tttccttcttccttttggggttagcccgacagaaatcgacactttcctcttcctttccatgttttaaggctggaagtgcattcaagtaaataccatttcc |
242 |
Q |
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| T |
46695420 |
tttccttcttccttttggggttagcccgacagaaatcgacactttcctcttcctttccatgttttaaggctggaagtgcattcaagtaaataccatttcc |
46695519 |
T |
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| Q |
243 |
ttgtaaaacacatatctgtgaatcacttgtgttttc |
278 |
Q |
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| T |
46695520 |
ttgtaaaacacgtatctttgaatcacttgtgttttc |
46695555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 46704053 - 46704117
Alignment:
| Q |
205 |
tttaaggctggaagtgcattcaagtaaataccatttccttgtaaaacacatatctgtgaatcact |
269 |
Q |
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| T |
46704053 |
tttaaggctggaagtgcattcaagtaaaaaccatttccttgtaaaacacacttctgtgaatcact |
46704117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 46702294 - 46702339
Alignment:
| Q |
58 |
agcataactcctattgtgacaaaagaaaaagaaaattgtcctcatt |
103 |
Q |
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| T |
46702294 |
agcatagctcctattgtaacaaaagaaaaccaaaattgtcctcatt |
46702339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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