View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8885_low_10 (Length: 299)
Name: NF8885_low_10
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8885_low_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 299
Target Start/End: Complemental strand, 23888795 - 23888499
Alignment:
| Q |
3 |
aattatatgaatgttcaattgcaaagtgaactaacctcttcaccccaatttggacatgcaccttttagtgacaccaaatcattcctccacagtccttgaa |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23888795 |
aattatatgaatgttcacttgcaaagtgaactaacctcttctccacaatttggacatgcaccttttagtgacaccaaatcattcctccacagtccttgaa |
23888696 |
T |
|
| Q |
103 |
gcaccttaactgtgaaaatacatacacatcagcagtggcaatgtgaggaataactgattagttttctgaggctacataaagagaactctccaaccaattg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23888695 |
gcaccttaactgtgaaaatacatacacataagcagtggcaatgtgaggaataattgattagttttctgaggctacataaagagaactttccaaccaattg |
23888596 |
T |
|
| Q |
203 |
aacacaattgaaatgttgttttcagtagaaataaatttgaaaattaaagcgtcaaatgaagaagagtgataacagcagagagatttttacctgaagc |
299 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23888595 |
aacacaattgaaatgttgtattcagtagaaataaatttgaaaattaaagcgtcaaatgaagaagagtgataacagcagagagatttttacctgaagc |
23888499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 41518607 - 41518536
Alignment:
| Q |
32 |
actaacctcttcaccccaatttggacatgcaccttttagtgacaccaaatcattcctccacagtccttgaag |
103 |
Q |
| |
|
|||||||||||| || ||||||||||||| ||| ||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
41518607 |
actaacctcttctccacaatttggacatgaaccctttagtgctgccaagtcattcctccacaagccttgaag |
41518536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University