View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8885_low_12 (Length: 277)
Name: NF8885_low_12
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8885_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 5689960 - 5690202
Alignment:
| Q |
21 |
aatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggtta |
120 |
Q |
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| T |
5689960 |
aatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggtta |
5690059 |
T |
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| Q |
121 |
aatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690060 |
aatatggtccttgaactgctaagtgaccataatcaccaaaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaa |
5690159 |
T |
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| Q |
221 |
aatgcaaataccagttgttattccaatacgtttttgtagatct |
263 |
Q |
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| T |
5690160 |
aatgcaaataccagttgttattccaatacgtttttgtagatct |
5690202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 25914644 - 25914879
Alignment:
| Q |
21 |
aatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggtta |
120 |
Q |
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| T |
25914644 |
aatggaaaaacaatttgattgagcttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacagttagatatgtgtcctca---taggtta |
25914740 |
T |
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| Q |
121 |
aatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaa |
220 |
Q |
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| T |
25914741 |
ggtaaggtccttgcacagctatttgaccatagtctccaacgtgaaaactgtagattgcttcatatctgtcaccatacttttctgctttgtgttgaatcaa |
25914840 |
T |
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| Q |
221 |
aatgcaaataccagttgttattccaatacgtttttgtag |
259 |
Q |
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| T |
25914841 |
tatgcaaataccagctgttattccaatgcgtttttgtag |
25914879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 6792727 - 6792538
Alignment:
| Q |
21 |
aatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggtta |
120 |
Q |
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|||||||| ||||||||||| | ||| |||||||| | |||||||||||||||||||| |||||||||||||| | |||||| ||||| ||| |||| |
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| T |
6792727 |
aatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagtta |
6792628 |
T |
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| Q |
121 |
aatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgt |
210 |
Q |
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| T |
6792627 |
aataagaaccttgcacagaaatatgaccatactctccaaaataaaaactatatattgcttcatatatgtccccttttttctctgctttgt |
6792538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 6800198 - 6799978
Alignment:
| Q |
21 |
aatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggtta |
120 |
Q |
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| T |
6800198 |
aatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaatattccagttccaccagttacaaccaagtaagtatcctc---ataagtta |
6800102 |
T |
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| Q |
121 |
aatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaa |
220 |
Q |
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|||| | ||||| || | |||||||| |||||||||| |||||||| |||||||||||| | || ||||| || || ||||||| || ||||| |
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| T |
6800101 |
aataagaaccttgtacataaatatgaccatagtctccaaaataaaaactgtatattgcttcatatatgtccccttttttctctgctttgttttgaattaa |
6800002 |
T |
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| Q |
221 |
aatgcaaataccagttgttattcc |
244 |
Q |
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|| || || |||| ||||||||| |
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| T |
6800001 |
aacacatattccagctgttattcc |
6799978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 22227490 - 22227359
Alignment:
| Q |
59 |
aacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctcca |
158 |
Q |
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|||||||||||| |||||||||||||| || | ||| ||||| ||||| | | || || | ||| |||||||| |||| || |||||||| |||||| |
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| T |
22227490 |
aacaccttcaaagattccagaaccacctgttatagcaagatatgtgtctt---ggtatgtgagataaggtccttgtactgatatatgaccatagtctcca |
22227394 |
T |
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| Q |
159 |
aaatggaaactgtagattgcttcatatctatcacc |
193 |
Q |
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|| | ||| ||||| |||||||||||||||||||| |
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| T |
22227393 |
aagtagaagctgtaaattgcttcatatctatcacc |
22227359 |
T |
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