View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8885_low_15 (Length: 225)
Name: NF8885_low_15
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8885_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5829871 - 5830074
Alignment:
| Q |
1 |
ctttctttcatgcaaagccattctttcaacagtacgtagtttggtgaatcaaaagggatgatagagacatggcttcttcttttttataaatcttccactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829871 |
ctttctttcatgcaaagccattctttcaacagtacgtagttaggtggatcaaaagggatgatagagacatggcttcttcttttttataaatcttccactt |
5829970 |
T |
|
| Q |
101 |
ctgtataaattatataagaccttgtttgaaaagcatcatttgctttataaaaacaagaacattatttgctaactaaaggtggagagaggacagggcatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829971 |
ctgtataaattatataagaccttgtttgaaaagcatcatttgctttataaaaacaagaacattatttgctaactaaaggtggagagaggacagggcatag |
5830070 |
T |
|
| Q |
201 |
gcgt |
204 |
Q |
| |
|
|||| |
|
|
| T |
5830071 |
gcgt |
5830074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 5880574 - 5880765
Alignment:
| Q |
1 |
ctttctttcatgcaaagccattctttcaacagtacgtagtttggtgaatcaaaagggatgatagagacatggcttcttc--ttttttataaatcttccac |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5880574 |
ctttctttcatgcaaagccattctttcaacagtacgtagttaggtaaatcaaaaggaatgacagagacatggcttcttcttttttttataaatcttccat |
5880673 |
T |
|
| Q |
99 |
ttctgtataaattatataagaccttgtttgaaaagcatcatttgctttataaaaacaagaa------cattatttgctaactaaaggtggag |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||||| |
|
|
| T |
5880674 |
ttctgtataaattatataagaccttgtttgaaaagcatcatttgctttattaaaaaaaaaaaggaagcattatttgctaactaaaggtggag |
5880765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University