View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8885_low_2 (Length: 391)
Name: NF8885_low_2
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8885_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 4598781 - 4599157
Alignment:
| Q |
1 |
taatttagtagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctct |
100 |
Q |
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| T |
4598781 |
taatttaatagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctct |
4598880 |
T |
|
| Q |
101 |
tcgagtgacagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttc----nnnnnnnnnnttattagacaattgatttgatt |
196 |
Q |
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| T |
4598881 |
tcgagtgacagcgttgaatcattgtcctcgttcatacctatgatttaaatttattagaattttcaaaaaaaaataaaattattagacaattgatttgatt |
4598980 |
T |
|
| Q |
197 |
aggaaagaaccaaaaaatattaaatggttgatatacagactatattatcttgcattctatgttagaagtnnnnnnnnnnnnnnnnnnnnngtatgtaata |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
4598981 |
aggaaagaaccaaaaaatattaaatggttgatatacagactatattatcttgcattctatgttagaagtaaataaaaagaaaatttaaaagaatgtaata |
4599080 |
T |
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| Q |
297 |
taaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaat |
373 |
Q |
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| T |
4599081 |
taaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaat |
4599157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 4623302 - 4623447
Alignment:
| Q |
19 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
118 |
Q |
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| T |
4623302 |
agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga |
4623401 |
T |
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| Q |
119 |
tcattgtcctcgttcatacctatgatttaaatttattagaattttc |
164 |
Q |
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| T |
4623402 |
tcattgacttcattcatacctatgatttaaatttattagaattttc |
4623447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 4623500 - 4623584
Alignment:
| Q |
289 |
atgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaat |
373 |
Q |
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| T |
4623500 |
atgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaat |
4623584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
| Q |
30 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
129 |
Q |
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| T |
25016030 |
tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc |
25016129 |
T |
|
| Q |
130 |
gttcataccta |
140 |
Q |
| |
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|| |||||||| |
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| T |
25016130 |
gtccataccta |
25016140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
| Q |
30 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
129 |
Q |
| |
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|||||||||| |||| |||||| ||||| |||||| ||||||| ||||||| |||||||||||| |||||||| ||||| ||||||| |||||| ||| |
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| T |
25037313 |
tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc |
25037412 |
T |
|
| Q |
130 |
gttcataccta |
140 |
Q |
| |
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|| |||||||| |
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| T |
25037413 |
gtccataccta |
25037423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 25016383 - 25016455
Alignment:
| Q |
301 |
tattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaat |
373 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||||| |||||||| ||||||||| |||||||| |
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| T |
25016383 |
tattaccattttctgttatgtaaatcaatggattattatactttgtctttgtgtgcaacagtagttcctgaat |
25016455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
| Q |
46 |
ataatatagatgacgataatagtaatcaattctgttagtatc |
87 |
Q |
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| T |
25002311 |
ataataaagatgacgataaaagtaatcaattctgtcagtatc |
25002270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 25037649 - 25037718
Alignment:
| Q |
304 |
taccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaat |
373 |
Q |
| |
|
|||||||||| |||||| |||| ||| |||||||||||| |||||||||||||||||| || ||||| |
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| T |
25037649 |
taccattttcggttatgtaaatcacagggttgttatactttgtctttgtgtacaacagtagttcttgaat |
25037718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 18805701 - 18805556
Alignment:
| Q |
19 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
118 |
Q |
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||||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| | | |||||||||| | |||||||||||| || |||| | |
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| T |
18805701 |
agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga |
18805602 |
T |
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| Q |
119 |
tcattgtcctcgttcatacctatgatttaaatttattagaattttc |
164 |
Q |
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|||| || ||| || | ||||||||||||||||||||||| ||||| |
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| T |
18805601 |
tcatcgtactcatttaaacctatgatttaaatttattagagttttc |
18805556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 18805481 - 18805402
Alignment:
| Q |
294 |
atataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaat |
373 |
Q |
| |
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|||||| |||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||| || ||||| |
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| T |
18805481 |
atataagtattaccattttctgttatgtaaataacaggattgttatactttttctttatgtacaacagtagctcttgaat |
18805402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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