View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8885_low_8 (Length: 322)
Name: NF8885_low_8
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8885_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 39236751 - 39236436
Alignment:
| Q |
1 |
gtgttctttgcattgataagcttaaccaacatgcttataagttgtccttcatcaccgggtatagccatatggttcctgtttcaatatacacatattgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39236751 |
gtgttctttgcattgataagcttaaccaacatgcttataagttgtccttcatcaccgggtatagccatatggttcctgtttcaatatacacatattgata |
39236652 |
T |
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| Q |
101 |
caatttttatataccaaaactaaacctttgagataactaaaattcatttaaataattggcttttctcgacataagcattgattagagatcaaacctatca |
200 |
Q |
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| T |
39236651 |
caatttttatataccaaaactaaacctttgagataactaaaattcatttaaattattggcttttctcgacataagcattgattagagatcaaacctatca |
39236552 |
T |
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| Q |
201 |
aattagcaaagaactcaagtatatactacttacttgggcttgttnnnnnnncctaagtgtcgtactatgttggtataatatcaaatatatattacaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39236551 |
aattagcaaagaactcaagtatatactacttacttgggcttgttaaaaaaacctaagtgtcgtactatgttggtataatatcaaatatatattacaagat |
39236452 |
T |
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| Q |
301 |
tcatattttaagaaat |
316 |
Q |
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|||||||||||||||| |
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| T |
39236451 |
tcatattttaagaaat |
39236436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39049287 - 39049219
Alignment:
| Q |
1 |
gtgttctttgcattgataagcttaaccaacatgcttataagttgtccttcatcaccgggtatagccata |
69 |
Q |
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| T |
39049287 |
gtgttctttgcattgatgagcttgatcaacatgcttataagttgtccttcatcagcgggtgtagccata |
39049219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39054782 - 39054706
Alignment:
| Q |
1 |
gtgttctttgcattgataagcttaaccaacatgcttataagttgtccttcatcaccgggtatagccatatggttcct |
77 |
Q |
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||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| | |||||| ||||||| |
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| T |
39054782 |
gtgttctttgcattgatgagcttaatcaacatccttataagttgtccttcatcagcaggtgtggccataaggttcct |
39054706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39292032 - 39292099
Alignment:
| Q |
1 |
gtgttctttgcattgataagcttaaccaacatgcttataagttgtccttcatcaccgggtatagccat |
68 |
Q |
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||||||||||||||||| ||||||| | |||| | ||||| || ||||||||||||||| ||||||| |
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| T |
39292032 |
gtgttctttgcattgatgagcttaattagcatgttgataagctggccttcatcaccgggtgtagccat |
39292099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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