View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8885_low_9 (Length: 308)

Name: NF8885_low_9
Description: NF8885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8885_low_9
NF8885_low_9
[»] chr5 (5 HSPs)
chr5 (57-296)||(43240519-43240758)
chr5 (122-290)||(38927812-38927979)
chr5 (58-129)||(38928005-38928075)
chr5 (1-37)||(43239891-43239927)
chr5 (141-210)||(21115189-21115258)
[»] chr7 (2 HSPs)
chr7 (122-290)||(3570869-3571036)
chr7 (58-129)||(3571062-3571132)
[»] chr1 (2 HSPs)
chr1 (136-290)||(46354238-46354391)
chr1 (58-129)||(46354434-46354505)
[»] scaffold0039 (1 HSPs)
scaffold0039 (131-223)||(80963-81059)
[»] chr8 (1 HSPs)
chr8 (141-210)||(43651982-43652051)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 57 - 296
Target Start/End: Original strand, 43240519 - 43240758
Alignment:
Q  57 actttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcactttctgaagtttaattgataatcataaagt 156  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43240519 actttcaatttgttattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcactttctgaagtttaattgataatcataaagt 43240618  T
Q  157 aaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttctgagttttattgccactataaacttggtgggtgc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43240619 aaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttctgagtattattgccactataaacttggtgggtgc 43240718  T
Q  257 aacatctaattatacttgcggaatttcggctattcatctc 296  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43240719 aacatctaattatacttgcggaatttcggctattcatctc 43240758  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 38927979 - 38927812
Alignment:
Q  122 tgcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatactt 221  Q
    ||||||||  ||| ||||||| ||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  38927979 tgcacttttggaattttaattcataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtactccaaatatactt 38927883  T
Q  222 ct--gagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt 290  Q
    ||  || ||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  38927882 ctatgaatttcattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatt 38927812  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 38928075 - 38928005
Alignment:
Q  58 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 129  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  38928075 ctttcaatttgctattttttatgtaatgaaaaggactttcatcagttac-caccacaaatgccttgcacttt 38928005  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43239891 - 43239927
Alignment:
Q  1 ttcttttgttgtagtattatctataatctatatctat 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  43239891 ttcttttgttgtagtattatctataatctataactat 43239927  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 21115258 - 21115189
Alignment:
Q  141 ttgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactc 210  Q
    ||||||||||||||| ||| ||||  |  |||||| |||||||  ||||| |||||||||||||||||||    
T  21115258 ttgataatcataaagaaaatttttgttgtgataatgattgggtgagaaaaatgtaaaactaatagtactc 21115189  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 3571036 - 3570869
Alignment:
Q  122 tgcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatactt 221  Q
    ||||||||  ||| ||||||| ||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  3571036 tgcacttttggaattttaattcataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtactccaaatatactt 3570940  T
Q  222 ct--gagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt 290  Q
    ||  || ||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  3570939 ctatgaatttcattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatt 3570869  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 3571132 - 3571062
Alignment:
Q  58 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 129  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  3571132 ctttcaatttgctattttttatgtaatgaaaaggactttcatcaattac-caccacaaatgccttgcacttt 3571062  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 290
Target Start/End: Complemental strand, 46354391 - 46354238
Alignment:
Q  136 tttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttct--gagttttatt 233  Q
    ||||||||||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||  ||||||||||||  || |||||||    
T  46354391 tttaattgataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtacttcaaatatacttctatgaattttatt 46354295  T
Q  234 gccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt 290  Q
    ||||||||||| |||||| |||||| |||||||||||||||| ||||||| ||||||    
T  46354294 gccactataaatttggtgtgtgcaatatctaattatacttgcagaatttcagctatt 46354238  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 46354505 - 46354434
Alignment:
Q  58 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 129  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  46354505 ctttcaatttgctattttttacgtaatgaaaaggacttccatcagttaccaaccacaaatgccttgcacttt 46354434  T

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Target: scaffold0039 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 80963 - 81059
Alignment:
Q  131 tgaagtttaattgataatcataaagtaaagttttactacgataatta----ttgggtaggaaaattgtaaaactaatagtactcaaaatatacttct 223  Q
    ||||| || |||||||||||||||||||||||||| |  ||||||||    ||||||  ||||||||||||||||||||||||| | ||||||||||    
T  80963 tgaaggtttattgataatcataaagtaaagttttaatgtgataattaatgattgggtgagaaaattgtaaaactaatagtactccatatatacttct 81059  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 43652051 - 43651982
Alignment:
Q  141 ttgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactc 210  Q
    ||||||||||||||| ||| ||||  |  |||||| |||||||  ||||| |||||||||||||||||||    
T  43652051 ttgataatcataaaggaaatttttgttgtgataatgattgggtgagaaaaatgtaaaactaatagtactc 43651982  T

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