View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8886_low_1 (Length: 574)

Name: NF8886_low_1
Description: NF8886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8886_low_1
NF8886_low_1
[»] chr1 (4 HSPs)
chr1 (156-342)||(18790787-18790973)
chr1 (157-326)||(52733035-52733204)
chr1 (1-68)||(18790637-18790704)
chr1 (18-68)||(52732895-52732945)
[»] chr2 (2 HSPs)
chr2 (156-342)||(19211766-19211952)
chr2 (1-68)||(19211615-19211682)
[»] chr3 (6 HSPs)
chr3 (156-343)||(34901198-34901385)
chr3 (156-302)||(7590951-7591097)
chr3 (1-60)||(34901480-34901539)
chr3 (1-68)||(7591184-7591251)
chr3 (298-334)||(34905228-34905264)
chr3 (304-334)||(7602859-7602889)
[»] chr8 (8 HSPs)
chr8 (156-335)||(28940331-28940510)
chr8 (156-342)||(18076920-18077106)
chr8 (157-315)||(44526046-44526204)
chr8 (1-68)||(18077190-18077257)
chr8 (1-68)||(44525892-44525959)
chr8 (1-68)||(28940176-28940243)
chr8 (304-334)||(18079574-18079604)
chr8 (304-334)||(44520397-44520427)
[»] chr4 (2 HSPs)
chr4 (156-342)||(54531758-54531944)
chr4 (1-68)||(54532028-54532095)
[»] chr5 (9 HSPs)
chr5 (157-342)||(33683077-33683262)
chr5 (433-551)||(1668126-1668244)
chr5 (343-437)||(1661034-1661128)
chr5 (343-437)||(1679832-1679926)
chr5 (436-551)||(1679662-1679777)
chr5 (1-68)||(33683353-33683420)
chr5 (343-437)||(1668299-1668390)
chr5 (436-551)||(1660864-1660979)
chr5 (304-334)||(33685696-33685726)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 8e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 156 - 342
Target Start/End: Original strand, 18790787 - 18790973
Alignment:
Q  156 ggggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 255  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18790787 ggggacatgccaatttcgtaaataaaaaaactcgagtgaaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 18790886  T
Q  256 taaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctcagcc 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18790887 taaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctgagcc 18790973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 157 - 326
Target Start/End: Original strand, 52733035 - 52733204
Alignment:
Q  157 gggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactatt 256  Q
    |||||||| |||||||||||||       |||||||| ||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||    
T  52733035 gggacatgtcaatttcgtaaataaaaaaactcgagtgaaatatttataattaatttaggtggatcaaaaatataaatagcaaaaataatataaaactatt 52733134  T
Q  257 aaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcc 326  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  52733135 aaaactagtggtgacctgcaattgcagatttttcctcccctcccaccgtgagagaccttatttggtctcc 52733204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 18790637 - 18790704
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  18790637 tagtttttaccagtgccatgagcactattgttgtgatgatggtgctcgaaagagatgcagggaaatca 18790704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 52732895 - 52732945
Alignment:
Q  18 atgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    ||||||||||||||||||||||||||||| | |||||||| |||| |||||    
T  52732895 atgagcactattgttgtgatgatggtgctcgaaagagatgtagggaaatca 52732945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 156 - 342
Target Start/End: Original strand, 19211766 - 19211952
Alignment:
Q  156 ggggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 255  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19211766 ggggacatgccaatttcgtaaataaaaaaactcgagtgaaatatttataattaacttaggtgggtcaaaagtataaatagcaaaaataatataaaactat 19211865  T
Q  256 taaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctcagcc 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19211866 taaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctgagcc 19211952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19211615 - 19211682
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||    
T  19211615 tagtttttaccagtgccatgagcactattgttttgatgatggtgctcgaaagagatgcagggaaatca 19211682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 156 - 343
Target Start/End: Complemental strand, 34901385 - 34901198
Alignment:
Q  156 ggggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 255  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34901385 ggggacatgccaatttcgtaaataaaaaaactcgagtgaaatatttataattaacttaggtgggtcaaaagtataaatagcaaaaataatataaaactat 34901286  T
Q  256 taaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctcagccg 343  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34901285 taaaactaatggtgacctgcaattgtaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctgagccg 34901198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 156 - 302
Target Start/End: Complemental strand, 7591097 - 7590951
Alignment:
Q  156 ggggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 255  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  7591097 ggggacatgccaatttcgtaaataaaaaaactcgagtggaatatttataattagcttaggtgggtcaaaagtataaatagcaaaaataatataaaactat 7590998  T
Q  256 taaaactagtggtgacctgcaattgcaggttttttctcccctcccac 302  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  7590997 taaaactagtggtgacctgtaattgcaggttttttctcccctcccac 7590951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34901539 - 34901480
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcag 60  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  34901539 tagtttttaccagtgccatgagcactattgttgtgatgatggtgctcgaaagagatgcag 34901480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7591251 - 7591184
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||    
T  7591251 tagtttttacccgtgccatgggcactattgttgtgatgatggtgctgaaaagagatgcagggaaatca 7591184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 34905228 - 34905264
Alignment:
Q  298 cccaccgtgagagacctgatttggtctcccacgctag 334  Q
    ||||| |||||||||||||||||||||||||||||||    
T  34905228 cccacggtgagagacctgatttggtctcccacgctag 34905264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 7602859 - 7602889
Alignment:
Q  304 gtgagagacctgatttggtctcccacgctag 334  Q
    |||||||||||||||||||||||||||||||    
T  7602859 gtgagagacctgatttggtctcccacgctag 7602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 8e-75; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 156 - 335
Target Start/End: Original strand, 28940331 - 28940510
Alignment:
Q  156 ggggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 255  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  28940331 ggggacatgccaatttcgtaaacaaaaaaactcgagtggaatatttataattaacttaggtggatcaaaagtataaatagcaaaaataatataaaactat 28940430  T
Q  256 taaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagc 335  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28940431 taaagctagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagc 28940510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 156 - 342
Target Start/End: Complemental strand, 18077106 - 18076920
Alignment:
Q  156 ggggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 255  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18077106 ggggacatgccaatttcgtaaataaaaaaactcgagtgaaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 18077007  T
Q  256 taaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctcagcc 342  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  18077006 taaaactaatggtgacatacaattgcaggttttttctcccctcccaccgtgagagacctgatctggtctcccacgctagcctgagcc 18076920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 157 - 315
Target Start/End: Original strand, 44526046 - 44526204
Alignment:
Q  157 gggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactatt 256  Q
    |||||||| |||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44526046 gggacatgtcaatttcgtaaataaaaaaactcgagtggaatatttataattaacttaaatgggtcaaaagtataaatagcaaaaataatataaaactatt 44526145  T
Q  257 aaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctg 315  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||    
T  44526146 aaaactagtggtaacctgcaattgcaggttttttctcacctcccaccgtaagagacctg 44526204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18077257 - 18077190
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  18077257 tagtttttaccagtgccatgagcactattgttgtgatgatggtgctcgaaagagatgcagggaaatca 18077190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44525892 - 44525959
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  44525892 tagtttttacccgtgccatgagcactattgttgtgatgatggtgttggaaagagatgcagggaaatca 44525959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 28940176 - 28940243
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    ||||||||||  ||||||||||||||||| |||||||||| ||||||  ||||||||||||| |||||    
T  28940176 tagtttttacccgtgccatgagcactatttttgtgatgatagtgctgaaaagagatgcagggaaatca 28940243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 18079574 - 18079604
Alignment:
Q  304 gtgagagacctgatttggtctcccacgctag 334  Q
    |||||||||||||||||||||||||||||||    
T  18079574 gtgagagacctgatttggtctcccacgctag 18079604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 44520427 - 44520397
Alignment:
Q  304 gtgagagacctgatttggtctcccacgctag 334  Q
    |||||||||||||||||||||||||||||||    
T  44520427 gtgagagacctgatttggtctcccacgctag 44520397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 156 - 342
Target Start/End: Complemental strand, 54531944 - 54531758
Alignment:
Q  156 ggggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactat 255  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  54531944 ggggacatgccaatttcgtaaataaaaaaactcgagtgaaatatttataattaacttaggtgggtcaaaagtataaataacaaaaataatataaaactat 54531845  T
Q  256 taaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctcagcc 342  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  54531844 taaaactaatggtgacttgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccatgctagcctgagcc 54531758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 54532095 - 54532028
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||    
T  54532095 tagtttttaccagtgccatgagcactattgttttgatgatggtgctcgaaagagatgcagggaaatca 54532028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 157 - 342
Target Start/End: Complemental strand, 33683262 - 33683077
Alignment:
Q  157 gggacatgccaatttcgtaaatnnnnnnnctcgagtggaatatttataattaacttagatgggtcaaaagtataaatagcaaaaataatataaaactatt 256  Q
    |||||||||||||||| |||||       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33683262 gggacatgccaatttcataaataaaaaaactcgagtggaatatttataattaacttaggtgggtcaaaagtataaatagcaaaaataatataaaactatt 33683163  T
Q  257 aaaactagtggtgacctgcaattgcaggttttttctcccctcccaccgtgagagacctgatttggtctcccacgctagcctcagcc 342  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||| ||||||| ||||    
T  33683162 aaaactaatggtgacctgcaattgcaggtattttctcccttcctatcgtgagagacctgatttggtctcccacactagcctgagcc 33683077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 433 - 551
Target Start/End: Original strand, 1668126 - 1668244
Alignment:
Q  433 taacaaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggta 532  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  1668126 taacaaagttgagtacccaaacttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgcggca 1668225  T
Q  533 atagaattggtggtgttcc 551  Q
    |||||||||||||||||||    
T  1668226 atagaattggtggtgttcc 1668244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 343 - 437
Target Start/End: Original strand, 1661034 - 1661128
Alignment:
Q  343 gtcttccacactaatacctagtaatgtaacaaaatatgatgtcatatcttgttcacgttgaaccaaaggtgtagtaaccacgccatcccctaaca 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  1661034 gtcttccacactaatacctagtaatgtaacaaaatatgatgtcatatcttgttcacgttgaactaaaggtgtagtaaccacaccatcccctaaca 1661128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 343 - 437
Target Start/End: Original strand, 1679832 - 1679926
Alignment:
Q  343 gtcttccacactaatacctagtaatgtaacaaaatatgatgtcatatcttgttcacgttgaaccaaaggtgtagtaaccacgccatcccctaaca 437  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  1679832 gtcttccacactaatacctagtaatgtaacataatatgatgtcatatcttgttcacgttgaactaaaggtgtagtaaccacgccttcccctaaca 1679926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 436 - 551
Target Start/End: Original strand, 1679662 - 1679777
Alignment:
Q  436 caaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggtaata 535  Q
    |||||||||| ||||||| |||||||||| |||||||||| ||||| |||||| ||| | |||||| || ||||| ||||||||||||||||||||||||    
T  1679662 caaagttgaggacccaaacttggatcatccgtaatgggttccaatggaactttgtttttgacttcaacatacactctatcatacaattgttgtggtaata 1679761  T
Q  536 gaattggtggtgttcc 551  Q
     | | |||||||||||    
T  1679762 tattcggtggtgttcc 1679777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33683420 - 33683353
Alignment:
Q  1 tagtttttactagtgccatgagcactattgttgtgatgatggtgctgggaagagatgcaggggaatca 68  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  33683420 tagtttttaccagtgccatgagcactattgttgtgatgatggtgctcgaaagagatgcagggaaatca 33683353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 343 - 437
Target Start/End: Original strand, 1668299 - 1668390
Alignment:
Q  343 gtcttccacactaatacctagtaatgtaacaaaatatgatgtcatatcttgttcacgttgaaccaaaggtgtagtaaccacgccatcccctaaca 437  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||| ||||||  |||||||||| |||||||| || ||||  |||||||    
T  1668299 gtcttccacactaatacctagtaatgtaacaaaatatgatg---tatctttttcacgaggaaccaaaggagtagtaacaacaccatttcctaaca 1668390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 551
Target Start/End: Original strand, 1660864 - 1660979
Alignment:
Q  436 caaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggtaata 535  Q
    |||||||||| ||||||| ||||||||| ||||||| |||  |||| ||| || ||| | |||||| || ||||| ||||||||||||||||||||||||    
T  1660864 caaagttgaggacccaaacttggatcatttgtaatgagttctaatggaacattgtttttgacttcaacatacactctatcatacaattgttgtggtaata 1660963  T
Q  536 gaattggtggtgttcc 551  Q
     | | |||||||||||    
T  1660964 tattcggtggtgttcc 1660979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 33685696 - 33685726
Alignment:
Q  304 gtgagagacctgatttggtctcccacgctag 334  Q
    |||||||||||||||||||||||||||||||    
T  33685696 gtgagagacctgatttggtctcccacgctag 33685726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University