View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8886_low_2 (Length: 470)
Name: NF8886_low_2
Description: NF8886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8886_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 3590083 - 3589650
Alignment:
| Q |
20 |
tcattttgttattagtatttagaatcttttcacgattaaaagtaaagattgaacnnnnnnnnntatataaaagttttt-aaagggagaaaatctaagagt |
118 |
Q |
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| T |
3590083 |
tcattttgttattagtatttagaatcttttcacgattaaaagtaaagattgaacaaaaaaaa-tatataaaagttttttaaagggagaaaatctaagagt |
3589985 |
T |
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| Q |
119 |
taattgggcgtaatggaccaatcttaaattcaaagtgaaacaattcaataatataaacatgcaagatttcaactagtatataataatcactannnnnnnn |
218 |
Q |
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| T |
3589984 |
taattgggcgtaatggaccaatcttaaattcaaagtgaaacaattcaataatataaagatgcaagatttcaactagtatataataatcactatttttttt |
3589885 |
T |
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| Q |
219 |
-ggtggtgtaactagtataatcactattgaaaagaggtaaagttgtttgagtgtaattggccggtgaggaatttgaatcctctccgtttctatagagaga |
317 |
Q |
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| T |
3589884 |
tggtggtgtaactagtataatcactattgaagagaggtaaagttgtttgagtataattggccggtgaggaatttgaatcctctccgcttctatagagaga |
3589785 |
T |
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| Q |
318 |
gattcatctagagatatcgatggaaaaataaaattatgaaaaattggtatattggatattcaatacaccactttgtttatttgtatatttctctagtatg |
417 |
Q |
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| T |
3589784 |
--ttcatctagagatatcgatggaaaaataaaattatgaaaaattggtatattggatattcaatacaccactttgtttatttgtatatttctctagtatg |
3589687 |
T |
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| Q |
418 |
gcaaaggatcccaactcagcaagtgagagtttcagtt |
454 |
Q |
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| T |
3589686 |
gcaaaggatcccaactcagcaagtgagagtttcagtt |
3589650 |
T |
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