View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8886_low_3 (Length: 407)

Name: NF8886_low_3
Description: NF8886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8886_low_3
NF8886_low_3
[»] chr7 (7 HSPs)
chr7 (108-386)||(48669514-48669795)
chr7 (10-65)||(14305100-14305155)
chr7 (16-71)||(47719697-47719752)
chr7 (16-72)||(48669803-48669859)
chr7 (10-65)||(13785580-13785635)
chr7 (27-65)||(24389620-24389658)
chr7 (25-65)||(3688394-3688434)
[»] chr2 (8 HSPs)
chr2 (18-71)||(36238724-36238777)
chr2 (11-71)||(29513134-29513194)
chr2 (10-65)||(16692960-16693015)
chr2 (33-65)||(20432377-20432409)
chr2 (10-65)||(15902868-15902923)
chr2 (16-71)||(40252027-40252082)
chr2 (17-71)||(11750262-11750316)
chr2 (33-65)||(36237642-36237674)
[»] chr5 (9 HSPs)
chr5 (10-71)||(2313951-2314012)
chr5 (16-71)||(1281840-1281895)
chr5 (16-65)||(1283492-1283541)
chr5 (19-65)||(19128780-19128826)
chr5 (27-65)||(29087935-29087973)
chr5 (27-71)||(235596-235640)
chr5 (25-65)||(7632105-7632145)
chr5 (16-64)||(9407261-9407309)
chr5 (27-71)||(22212982-22213026)
[»] chr4 (9 HSPs)
chr4 (16-65)||(55976177-55976226)
chr4 (16-71)||(24551916-24551971)
chr4 (16-71)||(55000692-55000747)
chr4 (16-63)||(55976948-55976995)
chr4 (10-65)||(19550297-19550352)
chr4 (17-71)||(20774174-20774228)
chr4 (28-65)||(9365821-9365858)
chr4 (19-71)||(24158816-24158868)
chr4 (27-71)||(30573713-30573757)
[»] chr3 (12 HSPs)
chr3 (16-65)||(17603179-17603228)
chr3 (16-64)||(17603954-17604002)
chr3 (10-65)||(21727516-21727571)
chr3 (18-71)||(46149634-46149687)
chr3 (16-71)||(11654022-11654077)
chr3 (196-235)||(46786689-46786728)
chr3 (19-65)||(48648214-48648260)
chr3 (17-65)||(265092-265140)
chr3 (33-65)||(40872818-40872850)
chr3 (19-71)||(48649169-48649221)
chr3 (19-71)||(48765066-48765118)
chr3 (33-65)||(52282422-52282454)
[»] chr8 (4 HSPs)
chr8 (10-65)||(32414510-32414565)
chr8 (16-72)||(28929849-28929905)
chr8 (19-65)||(38628261-38628307)
chr8 (19-71)||(31641516-31641568)
[»] chr1 (9 HSPs)
chr1 (16-71)||(24991974-24992029)
chr1 (10-71)||(47967866-47967927)
chr1 (16-64)||(24992737-24992785)
chr1 (27-71)||(25468514-25468558)
chr1 (17-65)||(30663368-30663416)
chr1 (196-235)||(34454164-34454203)
chr1 (19-65)||(25469082-25469128)
chr1 (24-65)||(28182073-28182114)
chr1 (33-65)||(45818031-45818063)
[»] scaffold2007 (1 HSPs)
scaffold2007 (17-71)||(755-809)
[»] chr6 (2 HSPs)
chr6 (17-71)||(8488473-8488527)
chr6 (25-65)||(19311828-19311868)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 108 - 386
Target Start/End: Complemental strand, 48669795 - 48669514
Alignment:
Q  108 atagattttataaggatggactaaaataatggatctttttgttcaaaggtaaaaggtggatggagtttaaatctttttggacgcatgac-gtttatgaga 206  Q
    |||||||| |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||    
T  48669795 atagatttaataatgatggactaaaagaatggaactttttgttcaaaggtaaaaggtggatggagtttaaatctttttggacgcagggccgtttataaga 48669696  T
Q  207 ttttggtggcctaaggcgaacctacaattggaaa-tatttgttttatttgtgttggaaatcgaaaagcaaatgg-agtatagagtgaagaaagtgagagg 304  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48669695 ttttggtggcctaaggcgaacctacaatttgaaaatatttgttttatttgtgttggaaatcgaaaagcaaatgggagtatagagtgaagaaagtgagagg 48669596  T
Q  305 aaagagtatattaattggttcgttaccttgcttgccacctgaagaatcatactattcagttctgttccatcacacacgtaac 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48669595 aaagagtatattaattggttcgttaccttgcttgccacctgaagaatcatactattctgttctgttccatcacacacgtaac 48669514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 14305155 - 14305100
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||| |||||||    
T  14305155 agagaaatgaacgtttaagatttggtgtcaatgaatccgttgacacctagtgtcaa 14305100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 47719697 - 47719752
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  47719697 atgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 47719752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 48669859 - 48669803
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatct 72  Q
    |||||||||||||||| ||||  ||||||| |||||| ||||||||||||| |||||    
T  48669859 atgaacgtttaagatttggtggtaatgaattcgttgacacctggtgtcaatggatct 48669803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 13785580 - 13785635
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| || |||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  13785580 agagaaattaacgcttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 13785635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 24389620 - 24389658
Alignment:
Q  27 agattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  24389620 agatttggtgtcaatgaatccgttgacacctggtgtcaa 24389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 3688434 - 3688394
Alignment:
Q  25 taagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||||| |||||||| ||||||||||||| ||||||||||    
T  3688434 taagatttggtgtcaacgaatccgttgatatctggtgtcaa 3688394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 36238724 - 36238777
Alignment:
Q  18 gaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  36238724 gaacgtttaagatttggtgtcaatgaatccgttgatacctggtgtcaatggatc 36238777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 29513134 - 29513194
Alignment:
Q  11 gagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||| ||||||||| |||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  29513134 gagaaatgaacgttcaagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 29513194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 16692960 - 16693015
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  16692960 agagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 16693015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 20432377 - 20432409
Alignment:
Q  33 ggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||||||||||||||||||||||||||||    
T  20432377 ggtgtcaatgaatccgttgatacctggtgtcaa 20432409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 15902868 - 15902923
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| ||||||| ||||||||  ||||||| ||||||||||| ||||||||||||    
T  15902868 agagaaatgaacgcttaagattttgtgtcaacgaatccgttgacacctggtgtcaa 15902923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 40252082 - 40252027
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    ||||||||||| |||| |||||||| ||||||||||| ||||||||| ||| ||||    
T  40252082 atgaacgtttaggatttggtgtcaacgaatccgttgacacctggtgttaatggatc 40252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 11750316 - 11750262
Alignment:
Q  17 tgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||| || ||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  11750316 tgaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 11750262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 36237674 - 36237642
Alignment:
Q  33 ggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||||||||||||||| ||||||||||||    
T  36237674 ggtgtcaatgaatccgttgacacctggtgtcaa 36237642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 2314012 - 2313951
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||    
T  2314012 agagaaatgaacgtttaagatttggtgtcaatgaatctgttgacacctggtgtcaatggatc 2313951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 1281895 - 1281840
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  1281895 atgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 1281840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 1283492 - 1283541
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||||    
T  1283492 atgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 1283541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 19128826 - 19128780
Alignment:
Q  19 aacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  19128826 aacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 19128780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 29087973 - 29087935
Alignment:
Q  27 agattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  29087973 agatttggtgtcaatgaatccgttgacacctggtgtcaa 29087935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 235640 - 235596
Alignment:
Q  27 agattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    ||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  235640 agatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 235596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 7632145 - 7632105
Alignment:
Q  25 taagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||||| |||||||| ||||||||||| ||||||||||||    
T  7632145 taagatttggtgtcaacgaatccgttgacacctggtgtcaa 7632105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9407309 - 9407261
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtca 64  Q
    ||||||| |||||||| |||||||| ||||||||||| || ||||||||    
T  9407309 atgaacgcttaagatttggtgtcaacgaatccgttgacacttggtgtca 9407261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 22212982 - 22213026
Alignment:
Q  27 agattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    ||||| |||||||||||||||||||| |||||| ||||| |||||    
T  22212982 agatttggtgtcaatgaatccgttgacacctggcgtcaactgatc 22213026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 55976226 - 55976177
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||||    
T  55976226 atgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 55976177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 24551916 - 24551971
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||||||||||||| ||||||||  |||||||||| ||||||||||||| ||||    
T  24551916 atgaacgtttaagatttggtgtcaacaaatccgttgacacctggtgtcaatggatc 24551971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 55000747 - 55000692
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||||||||||||| |||||||| ||||||||||| | ||||||||||| ||||    
T  55000747 atgaacgtttaagatttggtgtcaacgaatccgttgacatctggtgtcaatggatc 55000692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 55976948 - 55976995
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtc 63  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  55976948 atgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtc 55976995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 19550352 - 19550297
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| ||||||| |||| ||| |||||||| ||||||||||| ||||||||||||    
T  19550352 agagaaatgaacgcttaaaatttggtgtcaacgaatccgttgacacctggtgtcaa 19550297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 20774174 - 20774228
Alignment:
Q  17 tgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||| || ||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  20774174 tgaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 20774228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 9365821 - 9365858
Alignment:
Q  28 gattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  9365821 gatttggtgtcaatgaatccgttgacacctggtgtcaa 9365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 24158816 - 24158868
Alignment:
Q  19 aacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||| |||||||| |||||||| ||||| ||||| ||||||||||||| ||||    
T  24158816 aacggttaagatttggtgtcaacgaatctgttgacacctggtgtcaatggatc 24158868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 30573713 - 30573757
Alignment:
Q  27 agattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    ||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  30573713 agatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 30573757  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 17603228 - 17603179
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||||    
T  17603228 atgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 17603179  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 17603954 - 17604002
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtca 64  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  17603954 atgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtca 17604002  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 21727516 - 21727571
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  21727516 agagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 21727571  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 46149687 - 46149634
Alignment:
Q  18 gaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||||||||||| |||||||| |||||| |||| ||||||||||||| ||||    
T  46149687 gaacgtttaagatttggtgtcaacgaatccattgacacctggtgtcaatggatc 46149634  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 11654022 - 11654077
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||| ||||||||| |||||||| ||||||||||| | ||||||||||| ||||    
T  11654022 atgaacatttaagatttggtgtcaacgaatccgttgagatctggtgtcaatggatc 11654077  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 46786689 - 46786728
Alignment:
Q  196 cgtttatgagattttggtggcctaaggcgaacctacaatt 235  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  46786689 cgtttctgagattttggtggcctagggcgaacctacaatt 46786728  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 48648260 - 48648214
Alignment:
Q  19 aacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  48648260 aacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 48648214  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 265092 - 265140
Alignment:
Q  17 tgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||| || ||||| |||||||| ||||||||||| ||||||||||||    
T  265092 tgaacgcttgagatttggtgtcaacgaatccgttgacacctggtgtcaa 265140  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 40872818 - 40872850
Alignment:
Q  33 ggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||||||||||||||| ||||||||||||    
T  40872818 ggtgtcaatgaatccgttgacacctggtgtcaa 40872850  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 48649169 - 48649221
Alignment:
Q  19 aacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||| |||||||| |||||||| ||||| ||||| ||||||||||||| ||||    
T  48649169 aacggttaagatttggtgtcaacgaatctgttgacacctggtgtcaatggatc 48649221  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 48765066 - 48765118
Alignment:
Q  19 aacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||| |||||||| |||||||| |||||| |||| ||||||||||||| ||||    
T  48765066 aacggttaagatttggtgtcaacgaatccattgacacctggtgtcaatggatc 48765118  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 52282422 - 52282454
Alignment:
Q  33 ggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||||||||||||||| ||||||||||||    
T  52282422 ggtgtcaatgaatccgttgacacctggtgtcaa 52282454  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 32414510 - 32414565
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  32414510 agagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 32414565  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28929905 - 28929849
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatct 72  Q
    ||||| |||||||||| |||||||| ||||||||||| | ||||||||||| |||||    
T  28929905 atgaaagtttaagatttggtgtcaacgaatccgttgacatctggtgtcaatggatct 28929849  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 38628307 - 38628261
Alignment:
Q  19 aacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||| ||||||||  ||||||| ||||||||||||||||||||||||    
T  38628307 aacggttaagattttgtgtcaacgaatccgttgatacctggtgtcaa 38628261  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 31641568 - 31641516
Alignment:
Q  19 aacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||| |||||||| |||||||| |||||| |||| ||||||||||||| ||||    
T  31641568 aacggttaagatttggtgtcaacgaatccattgacacctggtgtcaatggatc 31641516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 24992029 - 24991974
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    ||||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||    
T  24992029 atgaacgtttatgatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 24991974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 47967927 - 47967866
Alignment:
Q  10 agagagatgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    ||||| ||||||| | |||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  47967927 agagaaatgaacgctcaagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 47967866  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24992737 - 24992785
Alignment:
Q  16 atgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtca 64  Q
    |||||||||||||||| | |||||| ||||||||||| |||||||||||    
T  24992737 atgaacgtttaagatttgatgtcaacgaatccgttgacacctggtgtca 24992785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 25468558 - 25468514
Alignment:
Q  27 agattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  25468558 agatttggtgtcaatgaatccgttgacacctggtgtcaatggatc 25468514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 30663416 - 30663368
Alignment:
Q  17 tgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  30663416 tgaacggttgagatttggtgtcaacgaatccgttgatacctggtgtcaa 30663368  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 34454203 - 34454164
Alignment:
Q  196 cgtttatgagattttggtggcctaaggcgaacctacaatt 235  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  34454203 cgtttctgagattttggtggcctagggcgaacctacaatt 34454164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 25469082 - 25469128
Alignment:
Q  19 aacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||| |||||||| |||||||| ||||||||||| ||||||||||||    
T  25469082 aacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaa 25469128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 28182073 - 28182114
Alignment:
Q  24 ttaagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||| |||||||| ||||||||||| ||||||||||||    
T  28182073 ttaagatttggtgtcaaagaatccgttgacacctggtgtcaa 28182114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 45818063 - 45818031
Alignment:
Q  33 ggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    |||||||||||||||||||| ||||||||||||    
T  45818063 ggtgtcaatgaatccgttgacacctggtgtcaa 45818031  T

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Target: scaffold2007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 809 - 755
Alignment:
Q  17 tgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||| || ||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  809 tgaacgcttgagatttggtgtcaacgaatccgttgaaacctggtgtcaatggatc 755  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 8488527 - 8488473
Alignment:
Q  17 tgaacgtttaagattaggtgtcaatgaatccgttgatacctggtgtcaattgatc 71  Q
    |||||| || ||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  8488527 tgaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 8488473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 19311828 - 19311868
Alignment:
Q  25 taagattaggtgtcaatgaatccgttgatacctggtgtcaa 65  Q
    ||||||| |||||||| ||||||||||| ||||||||||||    
T  19311828 taagatttggtgtcaacgaatccgttgacacctggtgtcaa 19311868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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