View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8887_low_3 (Length: 214)

Name: NF8887_low_3
Description: NF8887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8887_low_3
NF8887_low_3
[»] chr6 (5 HSPs)
chr6 (1-149)||(22045389-22045537)
chr6 (14-149)||(22357547-22357682)
chr6 (5-128)||(31265322-31265445)
chr6 (150-202)||(22045360-22045412)
chr6 (150-202)||(22357659-22357711)
[»] chr2 (2 HSPs)
chr2 (1-149)||(44355776-44355924)
chr2 (150-202)||(44355747-44355799)
[»] scaffold0008 (2 HSPs)
scaffold0008 (1-149)||(84191-84341)
scaffold0008 (150-202)||(84318-84370)
[»] chr8 (6 HSPs)
chr8 (1-149)||(2501465-2501613)
chr8 (1-149)||(2501927-2502074)
chr8 (68-149)||(31395869-31395950)
chr8 (150-202)||(2502051-2502103)
chr8 (150-202)||(2501436-2501488)
chr8 (150-202)||(31395927-31395979)
[»] chr1 (1 HSPs)
chr1 (21-135)||(12780745-12780859)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 22045537 - 22045389
Alignment:
Q  1 atcaatcttaccacacttaactcctacctgttttgacccatttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  22045537 atcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgagcactattttct 22045438  T
Q  101 tttaatatcctcatatcatcctcaaggattgaaacaagggaaagcaaat 149  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22045437 tttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaat 22045389  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 22357547 - 22357682
Alignment:
Q  14 cacttaactcctacctgttttgacccatttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgcttttaatatcctca 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  22357547 cacttaactcctacctgttttgacccacttcctacttccacgctactttgcatcaaaatattttccctaccatgaacactatttgcttttaatatcctca 22357646  T
Q  114 tatcatcctcaaggattgaaacaagggaaagcaaat 149  Q
    ||||||||||||||||||||||  |||||| |||||    
T  22357647 tatcatcctcaaggattgaaacccgggaaaacaaat 22357682  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 31265322 - 31265445
Alignment:
Q  5 atcttaccacacttaactcctacctgttttgacccatttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgctttta 104  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||||| | | ||||||  | |||||||||| |  | | |||||||||||| |||| |    
T  31265322 atcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttca 31265421  T
Q  105 atatcctcatatcatcctcaagga 128  Q
    || ||||||||||||| |||||||    
T  31265422 atgtcctcatatcatcatcaagga 31265445  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 22045412 - 22045360
Alignment:
Q  150 ggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgt 202  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  22045412 ggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgt 22045360  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 22357659 - 22357711
Alignment:
Q  150 ggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgt 202  Q
    |||||||||| ||||||| ||||||||||||||  ||||||||||||||||||    
T  22357659 ggattgaaacccgggaaaacaaatctttgtgtttacccaccaacctttgatgt 22357711  T

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Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 44355924 - 44355776
Alignment:
Q  1 atcaatcttaccacacttaactcctacctgttttgacccatttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  44355924 atcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgagcactattttct 44355825  T
Q  101 tttaatatcctcatatcatcctcaaggattgaaacaagggaaagcaaat 149  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||    
T  44355824 tttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaat 44355776  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 44355799 - 44355747
Alignment:
Q  150 ggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgt 202  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  44355799 ggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgt 44355747  T

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Target: scaffold0008 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 84191 - 84341
Alignment:
Q  1 atcaatcttaccacacttaactcctacctgttttgacccatttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  84191 atcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccttaccgtgaacactatttgct 84290  T
Q  101 tttaata--tcctcatatcatcctcaaggattgaaacaagggaaagcaaat 149  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  84291 tttaatatctcctcatatcatcctcaaggattgaaacacgggaaagcaaat 84341  T

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Target: scaffold0008; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 84318 - 84370
Alignment:
Q  150 ggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgt 202  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  84318 ggattgaaacacgggaaagcaaatctttgtgttcatccaccaacctttgatgt 84370  T

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Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 2501613 - 2501465
Alignment:
Q  1 atcaatcttaccacacttaactcctacctgttttgacccatttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |    
T  2501613 atcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatagaaatattttctctactgtgaacactatttgat 2501514  T
Q  101 tttaatatcctcatatcatcctcaaggattgaaacaagggaaagcaaat 149  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2501513 tttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaat 2501465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 2501927 - 2502074
Alignment:
Q  1 atcaatcttaccacacttaactcctacctgttttgacccatttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgct 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2501927 atcaatcttaccacacttaactcc-acctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgct 2502025  T
Q  101 tttaatatcctcatatcatcctcaaggattgaaacaagggaaagcaaat 149  Q
    || |||||| |||||||||||||||||||||||||| ||||||||||||    
T  2502026 ttaaatatcatcatatcatcctcaaggattgaaacacgggaaagcaaat 2502074  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 31395869 - 31395950
Alignment:
Q  68 gaaatattttccctaccgtgaacactatttgcttttaatatcctcatatcatcctcaaggattgaaacaagggaaagcaaat 149  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31395869 gaaatattttccctaccgtgaacactattttcttttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaat 31395950  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 2502051 - 2502103
Alignment:
Q  150 ggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2502051 ggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgt 2502103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 2501488 - 2501436
Alignment:
Q  150 ggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgt 202  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2501488 ggattgaaacacgggaaagcaaatatttgtgttcgcccaccaacctttgatgt 2501436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 31395927 - 31395979
Alignment:
Q  150 ggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgt 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31395927 ggattgaaacacgggaaagcaaatctttttgttcgcccaccaacctttgatgt 31395979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 12780745 - 12780859
Alignment:
Q  21 ctcctacctgttttgacccatttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgcttttaatatcctcatatcatc 120  Q
    ||||||| | |||||| ||| ||||||||||| | | ||||||  ||||||||||||||||||  | |||| | |||||||||||| |||||||||||||    
T  12780745 ctcctacatattttgaaccacttcctacttccccaccacttggtttcgaaatattttccctactttcaacattgtttgcttttaatgtcctcatatcatc 12780844  T
Q  121 ctcaaggattgaaac 135  Q
    ||||||  |||||||    
T  12780845 ctcaagtgttgaaac 12780859  T

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