View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_high_17 (Length: 432)
Name: NF8888_high_17
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Original strand, 44699139 - 44699545
Alignment:
| Q |
9 |
agtttggtgttatgaggacttcatacaatacccaaaaggctgaatggactgttgatgagatgattgttatagttatccaagaggaggagtctctcaaaaa |
108 |
Q |
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| T |
44699139 |
agtttgatgttatgaggacttcatacaatacccaaaaggctgaatggactgttgatgagatgattgttatagttatccaagaggaggagtctctcaaaaa |
44699238 |
T |
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| Q |
109 |
ggcgaaatttcagtgttcattttgttgctgcttcttctagcacaaaggatgtcaagagaaactttcataaaggaaaatattattctaatgataagaaaag |
208 |
Q |
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| T |
44699239 |
ggtgaaatttcagtgttcattttgttgctgcttcttctagcacaaaggatgtcaagagaaactttcataaaggaaaatattattctaatgataagaaaag |
44699338 |
T |
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| Q |
209 |
gggaaaggcagtgcaacatacgaagcttaaaaagaaaacatataagggaaacttccataaagatatttgcaagtaatgcactaagtatggctataaggtg |
308 |
Q |
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| T |
44699339 |
gggaaaggcagtgcaacatatgaagcttaaaaagaaaacatataagggaaacttccataaagatatttgcaagtaatgcactaagtatggctataaggtg |
44699438 |
T |
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| Q |
309 |
gttggctgctatttccttacaagggaaacttgagaagcaatgcacactcttagctctagcttgttttgaatctaatatagtagatgtaccttctgatact |
408 |
Q |
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| T |
44699439 |
gttgactgctatttccttacaagggaaacttgagaagcaatgcacactcttagctctagcttgttttgaatctaatatagtagatgtaccttctgatact |
44699538 |
T |
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| Q |
409 |
tggtggt |
415 |
Q |
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| T |
44699539 |
tggtggt |
44699545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 44699992 - 44699600
Alignment:
| Q |
11 |
tttggtgttatgaggacttcatacaatacccaaaaggctgaatggactgttgatgagatgattgttatagttatccaagaggaggagtctctcaaaaagg |
110 |
Q |
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| T |
44699992 |
tttgatgttacgaggacttcttacaatacctaaaagactgaatgcactattgatgagatgattgctacaattacccatgcggag---tctctcagaaagg |
44699896 |
T |
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| Q |
111 |
cgaaatttca--gtgttcattttgttgctgcttcttctagcacaaaggatgtcaagagaaactttcataaaggaaaatattattctaatgataagaaa-- |
206 |
Q |
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| T |
44699895 |
tgaattcttaaagtgtttagtttgttgcttcttcttctgccacaaaggatgtaatgagaaactttcatgaaggaaaa-ataattatgatgataacaaata |
44699797 |
T |
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| Q |
207 |
-aggggaaaggcagtgcaacatacgaagcttaaaaagaaaacatataagggaaacttccataaagatatttgcaagtaatgcactaagtatggctataag |
305 |
Q |
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| T |
44699796 |
aaagggaaaggcagtgcaacatatggagcctactaaaaaatcacgaaagagaaactgccgtaaagagatttgcaactcctacgagaagtatggc---aag |
44699700 |
T |
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| Q |
306 |
gtggttggctgctatttccttacaagggaaacttgagaagcaatgcacactcttagctctagcttgttttgaatctaatatagtagatgtaccttctgat |
405 |
Q |
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| T |
44699699 |
gtggatgatggctatttcctaaaaagaaaaattt-agaagcaatgcac---------tctagtttgttttgaatctaatattgtatatttaccttctgat |
44699610 |
T |
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