View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_high_23 (Length: 367)
Name: NF8888_high_23
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 8032083 - 8031782
Alignment:
| Q |
14 |
taatactcaaattatcctagcttttgatctcacgatgaggacagcccacatttgcggtccttgatgcctcatattggcccaattcctcctcctgatctat |
113 |
Q |
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| T |
8032083 |
taatactcaaattatcccaacttttgatctcacgatgaggacagcccacatttgcggtccttgatgcatcatattggcccaattcctcctcctgatctat |
8031984 |
T |
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| Q |
114 |
ctgggttgtctaacctgtatcagacgttggggtgtaccgtccatgcactatcaatgtcgtcacattttgtaaacgagtttaaaaggacaaggttttccat |
213 |
Q |
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| T |
8031983 |
ctgggttgtctgacccgtatcagacgttgaggtgtaccgtccatgcactatcaatgtcgtcacattttgtaaacgagtttaaaaggacaaggttttccat |
8031884 |
T |
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| Q |
214 |
atgttagtaactcttgatgctaattatgaaagttcttagtagtcatattctcatgttgttaaagtgat--atcctaagccattttcacaaatatttaaaa |
311 |
Q |
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| T |
8031883 |
atgttagtaactcttgatgctgattatgaaagttcttagtagtcatattctcatgttgttaaagtgatacatcctaagccattttcgcaaatatttaaaa |
8031784 |
T |
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| Q |
312 |
ag |
313 |
Q |
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|| |
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| T |
8031783 |
ag |
8031782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 166 - 313
Target Start/End: Complemental strand, 8031760 - 8031611
Alignment:
| Q |
166 |
aatgtcgtcacattttgtaaacgagtttaaaaggacaaggttttccatatgttagtaactcttgatgctaattatgaaagttcttagtagtcatattctc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8031760 |
aatgtcgtcacattttgtaaacgagtttaaaaggacaaggttttccatatgttagtaactcttgatgctgattatgaaagttcttagtagtcatattctc |
8031661 |
T |
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| Q |
266 |
atgttgttaaagtgat--atcctaagccattttcacaaatatttaaaaag |
313 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
8031660 |
atgttgttaaagtgatacatcctaagccattttcgcaaatatttaaaaag |
8031611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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