View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_high_25 (Length: 349)

Name: NF8888_high_25
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_high_25
NF8888_high_25
[»] chr3 (2 HSPs)
chr3 (71-263)||(43918116-43918308)
chr3 (17-49)||(43918066-43918098)
[»] chr8 (1 HSPs)
chr8 (193-245)||(39128772-39128824)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 71 - 263
Target Start/End: Original strand, 43918116 - 43918308
Alignment:
Q  71 gaccataacacaggctgttgttctgctatgaaatataggaactaatcacaaccaggcaatgaaagaccgtaacataggcaggatatatattcgatgacac 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43918116 gaccataacacaggctgttgttctgctatgaaatataggaactaatcacaaccaggcaatgaaagaccgtaacataggcaggatatatattcgatgacac 43918215  T
Q  171 gaggagtgcaacaggagctaacatttatattacctgcaacatctcaacaagaagaataatgcgctcagcatgcttacggcaatttagacttaa 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43918216 gaggagtgcaacaggagctaacatttatattacctgcaacatctcaacaagaagaataatgcgctcagcatgcttacggcaatttagacttaa 43918308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 43918066 - 43918098
Alignment:
Q  17 agatataaaagtagctgacaggtttgggccaac 49  Q
    |||||||||||||||||||||||||||||||||    
T  43918066 agatataaaagtagctgacaggtttgggccaac 43918098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 39128824 - 39128772
Alignment:
Q  193 atttatattacctgcaacatctcaacaagaagaataatgcgctcagcatgctt 245  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39128824 atttatattacctgcaacatctcaacaagaagaataatacgctcagcatgctt 39128772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University