View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_high_34 (Length: 294)

Name: NF8888_high_34
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_high_34
NF8888_high_34
[»] chr3 (1 HSPs)
chr3 (1-294)||(28209270-28209563)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 28209270 - 28209563
Alignment:
Q  1 cccctaaatcatctttattgaagcctcttagtttaatcaaaactaaatatgcaaatttcggattatttaacggccaaaattgatgcatgcaaaatgacat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28209270 cccctaaatcatctttattgaagcctcttagtttaatcaaaattaaatatgaaaatttcggattatttaacggccaaaattgatgcatgcaaaatgacat 28209369  T
Q  101 gatatatataagcaatttataattgtacctgtaagaaagcatcttgatatcacaatcgggttttcttccataatccacatccatttgtttgatttgttca 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28209370 gatatatataagcaatttataattgtacctgtaagaaaacatcttgatatcacaatcgggttttcttccataatccacatccattcgtttgatttgttca 28209469  T
Q  201 caagatgaaagaaaagggacgttgaccatatgcaaactaccaatttgcacaccaatgtttccactaacatacacgtcaaacaccatctcgtatg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28209470 caagatgaaagaaaagggacgttgaccatatgcaaactaccaatttgcacaccaatgtttccactaacatacacgtcaaacaccatctcatatg 28209563  T

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