View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_high_38 (Length: 269)
Name: NF8888_high_38
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 35 - 252
Target Start/End: Original strand, 12008486 - 12008703
Alignment:
| Q |
35 |
gacctaacattaacttccaaggcaagctcttgagaaagtctttctcagcataacgcgacgtgagaatcccaatgaaaatcaatacagaagtggcagatgt |
134 |
Q |
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| T |
12008486 |
gaccgaacaataacttccaaggcaagctcttgagaaagtccttctcagcataacgcgatgtgagtattccaatgaaaatcaagacggaagttgcagatgc |
12008585 |
T |
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| Q |
135 |
gaagagagatattgcgtctgctaagagaaatgcagtaaatatgttgtcatgcaagaagatgggcaaaccagttttgtcgtcgtttccacctgggaccgta |
234 |
Q |
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| T |
12008586 |
gaagagagatactgcgtctgccatgagaaatgcagtgaatatgttgtcatgtaagaagatgggcaaaccagttttgtcgtcatttccacctgggaccgta |
12008685 |
T |
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| Q |
235 |
aaggctgcagcaaacatg |
252 |
Q |
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| T |
12008686 |
aaggctgcagcaaacatg |
12008703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 252
Target Start/End: Original strand, 11919058 - 11919270
Alignment:
| Q |
40 |
aacattaacttccaaggcaagctcttgagaaagtctttctcagcataacgcgacgtgagaatcccaatgaaaatcaatacagaagtggcagatgtgaaga |
139 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||| || || ||||| || ||||||||||| ||||||||||| |||||||||| |
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| T |
11919058 |
aacaataacttccaaggcaagctcttgaggaagtctttctcagcataacgagatgttagaattcctatgaaaatcaacacagaagtggccgatgtgaaga |
11919157 |
T |
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| Q |
140 |
gagatattgcgtctgctaagagaaatgcagtaaatatgttgtcatgcaagaagatgggcaaaccagttttgtcgtcgtttccacctgggaccgtaaaggc |
239 |
Q |
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| T |
11919158 |
gagataatgcgtctgccatgagaaatgtagtgaatacgctgtcattcaagaagatgggcaaaccggtatcttgattgtttccgcccgggactgtaaatgc |
11919257 |
T |
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| Q |
240 |
tgcagcaaacatg |
252 |
Q |
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| T |
11919258 |
tgcggcaaacatg |
11919270 |
T |
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