View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_high_40 (Length: 256)
Name: NF8888_high_40
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1726405 - 1726642
Alignment:
| Q |
1 |
atctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaagggatatctactaagctcttcaagttgttgagtcagaagaga |
100 |
Q |
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| T |
1726405 |
atctaataagttacctcaagtatcatgagatggagcttgttggagatgaatccgctaagggaaatctactaagctcttcaagttgttgagtcagaagaga |
1726504 |
T |
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| Q |
101 |
ctctagatggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaagaagaaaaatgtttccaacta |
200 |
Q |
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| T |
1726505 |
ctctagatggagaatctgaagatgggttagatgctga---------atttctgaccaaaatattcaagtaccttaccaagaagaaaaatgtttccaacta |
1726595 |
T |
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| Q |
201 |
gaactagtggatctaaaggatcaggctacaaggatgagaaggatgat |
247 |
Q |
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| T |
1726596 |
gaactagtggatctaaaggatcagactacaaggatgagaaggatgat |
1726642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 13293244 - 13293280
Alignment:
| Q |
23 |
tcatgagatggagcttgttggagatgaacccgctaag |
59 |
Q |
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| T |
13293244 |
tcatgagattgagcttgttggagatgaacctgctaag |
13293280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 17235888 - 17235817
Alignment:
| Q |
107 |
atggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaa |
179 |
Q |
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| T |
17235888 |
atggagaatctgaagatga-ttagatgctaaagagatgacatttctgaccaaaagatatcagtacctgaccaa |
17235817 |
T |
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