View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_high_41 (Length: 253)
Name: NF8888_high_41
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_high_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 32113576 - 32113812
Alignment:
| Q |
17 |
actctgatatccatgacttctgtacgggtggttgctatgatcacacacttttggtcttcaaatgcatccaagatgtcaagagagacttccattttgcgac |
116 |
Q |
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| T |
32113576 |
actctgatatccatgacttctgtacgggtggttgctatgatcacacacttttggtcttcaaatgcatccaagatgtcaagagagacttccattttgcgac |
32113675 |
T |
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| Q |
117 |
taaagcacacatctcatttgtcaagaatattactatgaatgcttgcaatgaacttaaaggtaacatcataaagttggttagaatgaannnnnnnnattaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32113676 |
taaagcacacatctcatttgtcaagaatattactatgaatgcttgcaatgaacttaaaggtaacatcataaagttggttagaatgaattttttttattaa |
32113775 |
T |
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| Q |
217 |
tctttggcctcaagataactttttatttggtactttt |
253 |
Q |
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| T |
32113776 |
tctttgggctcaagataactttttatttggtactttt |
32113812 |
T |
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