View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_high_50 (Length: 233)
Name: NF8888_high_50
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 17327684 - 17327484
Alignment:
| Q |
19 |
acaataagcacaatacttgggagcaattttatgttttttggatatgtcctttaattggtgctagttctgctgctatggtttatcggtttctatttatgtc |
118 |
Q |
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| T |
17327684 |
acaataagcacaatacttgggagcaattttatgttttttggatatgtcctttaattggtgctagttctgctgctatggtttatcggtttctatttatgtc |
17327585 |
T |
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| Q |
119 |
accagttaaggagaagaaagcttgagtcgagggacttagttctaaattgcggtccacaatcataattatgggcgtatcataaaggttttagaggtctctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17327584 |
accagttaaggagaagaaagcttgagtcgagggactttgttctaaattgcggtccacaatcataattatgggcgtatcataaaagttttagaggtctctg |
17327485 |
T |
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| Q |
219 |
c |
219 |
Q |
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| T |
17327484 |
c |
17327484 |
T |
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