View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_1 (Length: 1532)

Name: NF8888_low_1
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_1
NF8888_low_1
[»] chr5 (12 HSPs)
chr5 (399-967)||(42643271-42643835)
chr5 (1038-1520)||(42642713-42643201)
chr5 (17-115)||(42644062-42644160)
chr5 (116-245)||(42643907-42644038)
chr5 (248-329)||(31250154-31250230)
chr5 (248-329)||(38503269-38503345)
chr5 (248-329)||(43227873-43227949)
chr5 (1079-1127)||(29463128-29463176)
chr5 (270-329)||(4395863-4395922)
chr5 (1090-1128)||(31683385-31683423)
chr5 (248-329)||(17077368-17077444)
chr5 (285-326)||(19059019-19059060)
[»] chr8 (14 HSPs)
chr8 (248-329)||(41454839-41454915)
chr8 (272-318)||(2908086-2908132)
chr8 (1089-1127)||(12284160-12284198)
chr8 (272-326)||(43508463-43508517)
chr8 (248-329)||(1032577-1032653)
chr8 (270-327)||(22652707-22652764)
chr8 (248-329)||(41845441-41845517)
chr8 (1083-1127)||(39211178-39211222)
chr8 (270-329)||(4259883-4259942)
chr8 (270-329)||(5904386-5904445)
chr8 (270-329)||(36103934-36103993)
chr8 (1089-1130)||(38234153-38234194)
chr8 (248-329)||(39104614-39104689)
chr8 (248-329)||(44828445-44828521)
[»] chr7 (13 HSPs)
chr7 (270-327)||(38378243-38378300)
chr7 (248-329)||(40273828-40273904)
chr7 (270-329)||(4956104-4956163)
chr7 (248-329)||(48433722-48433798)
chr7 (1079-1127)||(31674946-31674994)
chr7 (270-329)||(24030009-24030068)
chr7 (270-329)||(31793492-31793551)
chr7 (270-329)||(34322036-34322095)
chr7 (1089-1127)||(41650848-41650886)
chr7 (272-318)||(47440805-47440851)
chr7 (248-329)||(12166089-12166165)
chr7 (285-326)||(14102500-14102541)
chr7 (285-326)||(14412517-14412558)
[»] chr6 (7 HSPs)
chr6 (248-329)||(6228272-6228348)
chr6 (1363-1431)||(8202198-8202266)
chr6 (270-329)||(18903379-18903438)
chr6 (270-329)||(20415574-20415633)
chr6 (270-328)||(1128432-1128490)
chr6 (285-326)||(14981717-14981758)
chr6 (248-329)||(17216965-17217041)
[»] chr1 (14 HSPs)
chr1 (248-329)||(24134636-24134712)
chr1 (248-329)||(43109250-43109326)
chr1 (248-329)||(34702325-34702401)
chr1 (270-329)||(25031509-25031568)
chr1 (270-329)||(30735852-30735911)
chr1 (248-329)||(48497225-48497301)
chr1 (285-329)||(9527465-9527509)
chr1 (270-326)||(42946482-42946538)
chr1 (1039-1070)||(31827032-31827063)
chr1 (270-329)||(50065034-50065093)
chr1 (248-329)||(4126906-4126982)
chr1 (285-326)||(43837416-43837457)
chr1 (248-329)||(49619979-49620055)
chr1 (248-329)||(50011514-50011590)
[»] chr4 (12 HSPs)
chr4 (270-329)||(45847938-45847997)
chr4 (270-329)||(11491231-11491290)
chr4 (270-329)||(46283146-46283205)
chr4 (271-321)||(15334814-15334864)
chr4 (248-329)||(40406972-40407049)
chr4 (248-329)||(16556458-16556534)
chr4 (1079-1132)||(37060448-37060501)
chr4 (285-329)||(24234086-24234130)
chr4 (270-329)||(36993065-36993124)
chr4 (248-358)||(39387485-39387590)
chr4 (1038-1067)||(17367320-17367349)
chr4 (270-327)||(22096405-22096462)
[»] chr3 (15 HSPs)
chr3 (270-329)||(46798606-46798665)
chr3 (278-329)||(29645839-29645890)
chr3 (248-329)||(25165447-25165524)
chr3 (1079-1125)||(48346959-48347005)
chr3 (248-329)||(11483620-11483696)
chr3 (248-329)||(29226333-29226409)
chr3 (248-329)||(47864643-47864719)
chr3 (1079-1127)||(9753351-9753399)
chr3 (1079-1127)||(10811268-10811316)
chr3 (1083-1127)||(13778569-13778613)
chr3 (1095-1130)||(27089860-27089895)
chr3 (270-329)||(27471528-27471587)
chr3 (250-329)||(27817080-27817153)
chr3 (248-329)||(33528217-33528293)
chr3 (248-329)||(39739281-39739357)
[»] scaffold0001 (1 HSPs)
scaffold0001 (248-329)||(419719-419795)
[»] chr2 (9 HSPs)
chr2 (1083-1127)||(2144856-2144901)
chr2 (248-316)||(11069370-11069433)
chr2 (274-326)||(23405227-23405279)
chr2 (1079-1127)||(38821497-38821545)
chr2 (270-329)||(17543102-17543161)
chr2 (1089-1127)||(40443192-40443230)
chr2 (272-329)||(18424164-18424221)
chr2 (270-327)||(18949698-18949755)
chr2 (1089-1126)||(40504369-40504406)
[»] scaffold0343 (1 HSPs)
scaffold0343 (1091-1131)||(8984-9024)
[»] scaffold0308 (1 HSPs)
scaffold0308 (285-326)||(7115-7156)


Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 399 - 967
Target Start/End: Complemental strand, 42643835 - 42643271
Alignment:
Q  399 ccagatattgaagattgaacattcatgttgctttccttttttcattgctgaaaataattcaatcta------atgatgttcgtaataagttggagagggt 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      |||||||||||||||||||||||||| |    
T  42643835 ccagatattgaagattgaacattcatgttgctttccttttttcattgctgaaaatatttcaatctagttataatgatgttcgtaataagttggagaggat 42643736  T
Q  493 ttacaacatgaatagttaaataaaaccttaaatttgattcttccaatgttaaagattggacatctannnnnnnagaggaaagactagacatctatgttgc 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  42643735 ttacaacatgaatagttaaataaaaccttaaatttgattcttccaatgttaaagattggacatctatttttttagaggaaagactagacatctatgttgc 42643636  T
Q  593 tcccctgtttcagttttttcattgtggaaaggatttttcttcttataacaatggtattcctaattgattggggagggttatgtcttgtattttaaagatt 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42643635 tcccctgtttcagttttttcattgtggaaaggatttttcttcttataacaatggtattcctaattgattggggagggttatgtcttgtattttaaagatt 42643536  T
Q  693 tgatatcatgttctttgtgccatagactttgtttccaaatgttgtatgtctgccgcagtggttctttggtgggagcagataactgaggtgaatgttctac 792  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       
T  42643535 tgatatcatgttctttgtgccatagactttgtttccaaatgttgtatgtctgccgcggtggttctttggtgggagcagataactgaggtgaatgttc--- 42643439  T
Q  793 cgactatactgactatgataaacaaagaaggtcttgcaatggtggatggacttgttcactagatcgatgagtttgctgaatcaggttatgatccatttcc 892  Q
          ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||    
T  42643438 ------tactgactatgataaacaaaggaggtcttgcaatggtggatggacgtgttcactagattgatgagtttgctgaagcaggttatgatctatttcc 42643345  T
Q  893 caggtgaaagaagaagaggaagaggtgaaagaggacnnnnnnnnngtgttaaattaaatggtatgagaaattata 967  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  42643344 caggtgaaagaagaagaggaagaggtgaaagaggac-aaaaaaaagtgttaaattaaatggtatgagaaattata 42643271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1038 - 1520
Target Start/End: Complemental strand, 42643201 - 42642713
Alignment:
Q  1038 ctctctctattgatttggtttttgtgtcaataatcatttagtaggttgtttcacaagttgtcaacaaaaatagttgttcaaataacactcttcaatggta 1137  Q
    ||||||||||||||||| |||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42643201 ctctctctattgatttgttttttgtgtcaataatcatttag---gttgtctcacaagttgtcaacaaaaatagttgttcaaataacactcttcaatagta 42643105  T
Q  1138 caagcaaatgtagtgcaagctcatc--aaagttactaatgcacggtacatgacatattttactagcgcgttgtagccagcgccatgcatcaatcac---- 1231  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||        
T  42643104 caagcaaatgtagtgtaagctcatcaaaaagttactaatgcacggtacatgacatattttactcgcgcgtagtagccaacgccatgcatcaatcacttgc 42643005  T
Q  1232 --ttaagagtttaacggtcaaactcacatacatgggtgaatcaatttgtttcaaattggggtcggttgccctcactaaattaaatttgccgtagttcttg 1329  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  42643004 ttttaagagtttaacggtcaaactcacatacatgggtgaatcaatttgtttcaaattggggtcggttgcccccactaaattaaatttgtcgtagttcttg 42642905  T
Q  1330 attttgtgtatggt-ttgnnnnnnnnaataagctaaaatgagatatattaacgaaaactcgttcattctaacacaagatgtaccagaaaagaacaaccaa 1428  Q
    ||||||| |||||| ||         ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  42642904 attttgtttatggtgtttttttttttaataagccaaaatgagatatattaacgaaaactcgttcattctagcacaagatgtatcagaaaagaacaaccaa 42642805  T
Q  1429 gttcaaaacaataaagaacaaagtaaacggacaaaaccatcaattatgatagttgaaaccaatttggggatattttgccttcaaacaccaaa 1520  Q
     ||||||||||||||||| ||||||||| |||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  42642804 attcaaaacaataaagaataaagtaaacagacaaaaccaccaattatgataatcgaaaccaatttagggatattttgccttcaaacaccaaa 42642713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 4e-48
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 42644160 - 42644062
Alignment:
Q  17 aaagataattaaagtgctgttaatgatcaatttacaattgagtatacaacaagtattgaattttggaggaagttgaaaaccgtaaattgagttcgtgaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42644160 aaagataattaaagtgctgttaatgatcaatttacaattgagtatacaacaagtattgaattttggaggaagttgaaaaccgtaaattgagttcgtgaa 42644062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 5e-35
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 42644038 - 42643907
Alignment:
Q  116 ttggggtttaaaggagttgtgaagctctcaaaaaataaaaattgtcactannnnnnnnnnnn--ctttctttcttaaactattgaataaaactctactgt 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||| |    
T  42644038 ttggggtttaaaggaggtgtgaagctctcaaaaaataaaaattgtcactaaatttcttttttttctttctttcttaaactattgaataaaactctactct 42643939  T
Q  214 ttatcacattagttaattaaaaccttcgccgt 245  Q
    ||||||||||||||||||||||||||||||||    
T  42643938 ttatcacattagttaattaaaaccttcgccgt 42643907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 31250154 - 31250230
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  31250154 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 31250230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 38503345 - 38503269
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  38503345 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 38503269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 43227873 - 43227949
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  43227873 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 43227949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1079 - 1127
Target Start/End: Original strand, 29463128 - 29463176
Alignment:
Q  1079 taggttgtttcacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  29463128 taggttgtcccacaagttgtcaacaaaaatggttgttcaaataacactc 29463176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 4395922 - 4395863
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||| ||||||||| |||| ||| ||||||  ||||||||||||||||||||    
T  4395922 ataatgcataatgtgtgcaggggccggagttcgaacccctgacaccccatttattcatct 4395863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1090 - 1128
Target Start/End: Complemental strand, 31683423 - 31683385
Alignment:
Q  1090 acaagttgtcaacaaaaatagttgttcaaataacactct 1128  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  31683423 acaagttgtcaacaaaaatggttgttcaaataacactct 31683385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 17077368 - 17077444
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||     |||||||| ||| |||||||||  |||| || |||||| |||||||||| ||||||||||    
T  17077368 agctcatttggtaaggg-----ataatgcacaatttgtgcaggggtcgggattcgaaccccggacaccccacttattcatct 17077444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 19059060 - 19059019
Alignment:
Q  285 tgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
    ||||||| |||||||| ||||||||||||||||| |||||||    
T  19059060 tgcaggggccggggttcgaaccctggacaccccacttattca 19059019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 41454915 - 41454839
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  41454915 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 41454839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 2908132 - 2908086
Alignment:
Q  272 aatgcataatatgtgcagggtccggggtttgaaccctggacacccca 318  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||    
T  2908132 aatgcataatatatgcaggggccggggttcgaaccctggacacccca 2908086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1089 - 1127
Target Start/End: Complemental strand, 12284198 - 12284160
Alignment:
Q  1089 cacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  12284198 cacaagttgtcaacaaaaatggttgttcaaataacactc 12284160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 43508517 - 43508463
Alignment:
Q  272 aatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
    |||||||||||| || |||| ||||||||||||||| |||||||||| |||||||    
T  43508517 aatgcataatatatgtaggggccggggtttgaaccccggacaccccacttattca 43508463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 1032577 - 1032653
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| | |||||| ||||||  ||||||||| ||||||||||    
T  1032577 agctcatttggtaagggataa-----tgcacaatatgtgcaggggctggggttcgaaccccagacaccccacttattcatct 1032653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 22652707 - 22652764
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcat 327  Q
    |||||||||||| ||||||||| |||| ||| |||||| |||||||||| ||||||||    
T  22652707 ataatgcataatttgtgcaggggccggtgttcgaaccccggacaccccaattattcat 22652764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 41845517 - 41845441
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| |||||||||||||  ||||||| |||||| | |||||| ||||||||||||    
T  41845517 agctcatttggtaagggataa-----tgcacaatatgtgcagggatcggggttcgaaccccgaacaccctatttattcatct 41845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1083 - 1127
Target Start/End: Original strand, 39211178 - 39211222
Alignment:
Q  1083 ttgtttcacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    |||| |||||||||||||||||||||  |||||||||||||||||    
T  39211178 ttgtctcacaagttgtcaacaaaaatgattgttcaaataacactc 39211222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 4259883 - 4259942
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||||||||||||| ||||||||  ||||| |||| ||||| ||||||||||    
T  4259883 ataatgcacaatatgtgcaggggccggggttccaaccccggactccccacttattcatct 4259942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 5904445 - 5904386
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| |||||||||||||  ||||||| |||||| ||||| |||| ||||||||||    
T  5904445 ataatgcacaatatgtgcaggggacggggttcgaaccccggacatcccacttattcatct 5904386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 36103993 - 36103934
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||||||||||||| |||||||| ||||||   |||||||| ||||||||||    
T  36103993 ataatgcacaatatgtgcaggggccggggttcgaaccccaaacaccccacttattcatct 36103934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1089 - 1130
Target Start/End: Original strand, 38234153 - 38234194
Alignment:
Q  1089 cacaagttgtcaacaaaaatagttgttcaaataacactcttc 1130  Q
    |||||||||||||| ||| | |||||||||||||||||||||    
T  38234153 cacaagttgtcaaccaaattggttgttcaaataacactcttc 38234194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 39104614 - 39104689
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||| | |||||||| |||||| ||||| |||| ||||||||||    
T  39104614 agctcatttggtaagggataa-----tgcacaatatgtgcagcggccggggttcgaaccccggaca-cccacttattcatct 39104689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 44828521 - 44828445
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||| ||||||||||| |||||| ||||||  |||||| || ||||||||||    
T  44828521 agctcatttggtaagggataa-----tgcacaatttgtgcagggtctggggttcgaaccccagacaccacacttattcatct 44828445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 38378243 - 38378300
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcat 327  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  38378243 ataatgcacaatatgtgcaggggccggggtttgaaccccggacaccccacttattcat 38378300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 40273828 - 40273904
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  40273828 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 40273904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 4956163 - 4956104
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| |||||||||||||  ||||||| ||||||||||||||||| ||||||||||    
T  4956163 ataatgcacaatatgtgcaggggtcggggttcgaaccctggacaccccacttattcatct 4956104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 48433798 - 48433722
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| ||||||||  ||||| |||||||||| ||||||||||    
T  48433798 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcaaaccccggacaccccacttattcatct 48433722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1079 - 1127
Target Start/End: Complemental strand, 31674994 - 31674946
Alignment:
Q  1079 taggttgtttcacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||    
T  31674994 taggttatttcacaagttgtcaacaaaaatgattgttcaaataacactc 31674946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 24030009 - 24030068
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| |||||||| |||| |||||||| ||||||  ||||||||||||||||||||    
T  24030009 ataatgcacaatatgtgtaggggccggggttcgaaccccagacaccccatttattcatct 24030068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 31793492 - 31793551
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| |||||||||||||  ||||||| |||||| |||||||||| ||||||||||    
T  31793492 ataatgcacaatatgtgcaggggtcggggttcgaaccccggacaccccacttattcatct 31793551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 34322095 - 34322036
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||||||||||||| | |||||||||| ||  ||||||||||||||||||||    
T  34322095 ataatgcacaatatgtgcagggactggggtttgaatcccagacaccccatttattcatct 34322036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1089 - 1127
Target Start/End: Original strand, 41650848 - 41650886
Alignment:
Q  1089 cacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  41650848 cacaagttgtcaacaaaaatgattgttcaaataacactc 41650886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 47440851 - 47440805
Alignment:
Q  272 aatgcataatatgtgcagggtccggggtttgaaccctggacacccca 318  Q
    |||||||||||| |||||||  ||||||| |||||||||||||||||    
T  47440851 aatgcataatatatgcaggggtcggggttcgaaccctggacacccca 47440805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 12166089 - 12166165
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||     |||||||| ||| ||||||||| | |||||| ||||||  ||||||||| ||||||||||    
T  12166089 agctcatttggtaaggg-----ataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttattcatct 12166165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 14102500 - 14102541
Alignment:
Q  285 tgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
    ||||||| ||||||||||||||| |||||||||| |||||||    
T  14102500 tgcaggggccggggtttgaaccccggacaccccacttattca 14102541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 14412517 - 14412558
Alignment:
Q  285 tgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
    ||||||| ||||||||||||||| |||||||||| |||||||    
T  14412517 tgcaggggccggggtttgaaccccggacaccccacttattca 14412558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 6228348 - 6228272
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  6228348 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 6228272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1363 - 1431
Target Start/End: Original strand, 8202198 - 8202266
Alignment:
Q  1363 aaaatgagatatattaacgaaaactcgttcattctaacacaagatgtaccagaaaagaacaaccaagtt 1431  Q
    |||||||||||||||||| |||||  |||| ||||| |||||||  |||||||||||||||||||||||    
T  8202198 aaaatgagatatattaacaaaaacatgttctttctagcacaagacataccagaaaagaacaaccaagtt 8202266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 18903438 - 18903379
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    ||||| || ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  18903438 ataatacacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 18903379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 20415633 - 20415574
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||||||||||||| || ||||| |||||| |||||||||| ||||||||||    
T  20415633 ataatgcacaatatgtgcaggggccagggttcgaaccccggacaccccacttattcatct 20415574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 1128490 - 1128432
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatc 328  Q
    ||||||||||||||||||||||   |||||| ||||||  |||||||||||||||||||    
T  1128490 ataatgcataatatgtgcaggggttggggttcgaaccccagacaccccatttattcatc 1128432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 14981758 - 14981717
Alignment:
Q  285 tgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
    ||||||| |||||||| ||||||||||||||||| |||||||    
T  14981758 tgcaggggccggggttcgaaccctggacaccccacttattca 14981717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 17216965 - 17217041
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     ||||||||||||| ||||  ||| ||| |||| | |||||||||| ||||||||||    
T  17216965 agctcatttggtaagggataa-----tgcataatatgtgtaggggtcggagttcgaactccggacaccccacttattcatct 17217041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 24134712 - 24134636
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  24134712 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 24134636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 43109326 - 43109250
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| ||||||| |||||||||||||    
T  43109326 agctcatttggtaagggataa-----tgcaaaatatgtgcaggggccggggttcgaaccccggacacctcatttattcatct 43109250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 34702401 - 34702325
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| ||||||| || ||||||||||    
T  34702401 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggggttcgaaccccggacacctcacttattcatct 34702325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 25031568 - 25031509
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||| |||||||| |||  | |||||||||| ||||||||||    
T  25031568 ataatgcataatatgtgcaggggccggggttcgaattccggacaccccacttattcatct 25031509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 30735852 - 30735911
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||| ||||||||| |||| |||||||||||||||||| || ||||||||||    
T  30735852 ataatgcacaatttgtgcaggggccggagtttgaaccctggacaccacacttattcatct 30735911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 48497301 - 48497225
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||| ||| ||| || |||||| ||||||||||||||    
T  48497301 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccggagttcgaatcccggacactccatttattcatct 48497225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 9527465 - 9527509
Alignment:
Q  285 tgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||    
T  9527465 tgcaggggtcggggtttgaaccctggacaccccacttattcatct 9527509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 42946538 - 42946482
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
    |||||||||| ||| ||||||| | ||||||||||||| |||||||||| |||||||    
T  42946538 ataatgcatattatatgcaggggctggggtttgaaccccggacaccccacttattca 42946482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1039 - 1070
Target Start/End: Original strand, 31827032 - 31827063
Alignment:
Q  1039 tctctctattgatttggtttttgtgtcaataa 1070  Q
    ||||||||||||||||||||||||||||||||    
T  31827032 tctctctattgatttggtttttgtgtcaataa 31827063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 50065034 - 50065093
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||||||||||||| |||||||| ||| |  |||||||||| ||||||||||    
T  50065034 ataatgcacaatatgtgcagggaccggggttcgaatctcggacaccccacttattcatct 50065093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 4126906 - 4126982
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||| ||||| | |||  |||||||| | |||||||||||||||||||||    
T  4126906 agctcatttggtaagggataa-----tgcacaatatatgcagaggccgatgtttgaacaccggacaccccatttattcatct 4126982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 43837457 - 43837416
Alignment:
Q  285 tgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
    |||||||  ||||||| |||||||||||||||||||||||||    
T  43837457 tgcaggggtcggggttcgaaccctggacaccccatttattca 43837416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 49619979 - 49620055
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| |||||||||||||  |||||||   |||| |||||||||| ||||||||||    
T  49619979 agctcatttggtaagggataa-----tgcacaatatgtgcaggggtcggggttcagaccccggacaccccacttattcatct 49620055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 50011514 - 50011590
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| | |||||| ||||||  |||| |||| ||||||||||    
T  50011514 agctcatttggtaagggataa-----tgcacaatatgtgcaggggctggggttcgaaccccagacatcccacttattcatct 50011590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 45847997 - 45847938
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    ||||||||||||||||||||||  ||||||| |||||| |||||||||| ||||||||||    
T  45847997 ataatgcataatatgtgcagggatcggggttcgaaccccggacaccccacttattcatct 45847938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 11491290 - 11491231
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||| ||||||||| |||| ||| |||||| |||||||||| ||||||||||    
T  11491290 ataatgcataatttgtgcaggggccggagttcgaaccccggacaccccacttattcatct 11491231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 46283146 - 46283205
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||||||||||| | |||||||| |||||| |||||||||| ||||||||||    
T  46283146 ataatgcacaatatgtgcagcggccggggttcgaaccccggacaccccacttattcatct 46283205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 15334864 - 15334814
Alignment:
Q  271 taatgcataatatgtgcagggtccggggtttgaaccctggacaccccattt 321  Q
    ||||||||||||| ||||||| || |||||||||||| |||||||||||||    
T  15334864 taatgcataatatatgcaggggccagggtttgaaccccggacaccccattt 15334814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 40407049 - 40406972
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtcc-ggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| || |||||| |||||| |||||||||| ||||||||||    
T  40407049 agctcatttggtaagggataa-----tgcacaatatgtgcaggggccgggggttcgaaccccggacaccccacttattcatct 40406972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 16556458 - 16556534
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| |||||||||||||  ||||||| |||||| | |||||||| ||||||||||    
T  16556458 agctcatttggtaagggataa-----tgcacaatatgtgcaggggtcggggttcgaaccccgaacaccccacttattcatct 16556534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1079 - 1132
Target Start/End: Original strand, 37060448 - 37060501
Alignment:
Q  1079 taggttgtttcacaagttgtcaacaaaaatagttgttcaaataacactcttcaa 1132  Q
    |||||||| ||| ||||||||||||||||| ||| |||||||||||||| ||||    
T  37060448 taggttgtctcaaaagttgtcaacaaaaatggttattcaaataacactcctcaa 37060501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 24234130 - 24234086
Alignment:
Q  285 tgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||    
T  24234130 tgcaggggccggggtttgaaccccggacaccccacttattcatct 24234086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 36993065 - 36993124
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| |||||||| ||||   ||||||||||||| |||||||||| ||||||||||    
T  36993065 ataatgcacaatatgtgaaggggttggggtttgaaccccggacaccccaattattcatct 36993124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 358
Target Start/End: Original strand, 39387485 - 39387590
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatctgagtttctctagtcacta 347  Q
    |||||||||||||||||||||     |||||||| ||||||||| || |  || ||||||| |||| || | ||||||| |||| ||||||||  |||||    
T  39387485 agctcatttggtaagggataa-----tgcataatttgtgcaggggcccgacttcgaaccctagacatcctacttattcacctgaatttctctaaccacta 39387579  T
Q  348 ggttacttgac 358  Q
    || ||||||||    
T  39387580 ggctacttgac 39387590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1038 - 1067
Target Start/End: Complemental strand, 17367349 - 17367320
Alignment:
Q  1038 ctctctctattgatttggtttttgtgtcaa 1067  Q
    ||||||||||||||||||||||||||||||    
T  17367349 ctctctctattgatttggtttttgtgtcaa 17367320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 22096462 - 22096405
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcat 327  Q
    |||||||| ||||||||||||| ||| |||| |||| | |||||||||| ||||||||    
T  22096462 ataatgcacaatatgtgcaggggccgaggttcgaactccggacaccccacttattcat 22096405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 46798606 - 46798665
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||||||||||||| ||||| || ||||||||||||||||| ||||||||||    
T  46798606 ataatgcacaatatgtgcaggggccgggattcgaaccctggacaccccacttattcatct 46798665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 29645890 - 29645839
Alignment:
Q  278 taatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  29645890 taatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 29645839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 25165447 - 25165524
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggaca-ccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| |||||||| |||||| ||||| ||||| ||||||||||    
T  25165447 agctcatttggtaagggataa-----tgcacaatatgtgcagggaccggggttcgaaccccggacacccccacttattcatct 25165524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1079 - 1125
Target Start/End: Original strand, 48346959 - 48347005
Alignment:
Q  1079 taggttgtttcacaagttgtcaacaaaaatagttgttcaaataacac 1125  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||    
T  48346959 taggttgtcccacaaattgtcaacaaaaatagttgttcaaataacac 48347005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 11483620 - 11483696
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| ||||||||||||| || ||||| |||| | |||||||||| ||||||||||    
T  11483620 agctcatttggtaagggataa-----tgcaaaatatgtgcaggggccagggttcgaactccggacaccccacttattcatct 11483696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 29226333 - 29226409
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    ||||||||||||||||||||| |     || ||||||||||||| |||||||| |||||| | |||||||| ||||||||||    
T  29226333 agctcatttggtaagggataaca-----cacaatatgtgcaggggccggggttcgaaccccgtacaccccacttattcatct 29226409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 47864643 - 47864719
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| |||||||||||||   |||||| |||||| |||||||||| ||||||||||    
T  47864643 agctcatttggtaagggataa-----tgcacaatatgtgcaggggttggggttcgaaccccggacaccccacttattcatct 47864719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1079 - 1127
Target Start/End: Original strand, 9753351 - 9753399
Alignment:
Q  1079 taggttgtttcacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    ||||||||  ||||||||||||||||||||  |||||||||||||||||    
T  9753351 taggttgtcccacaagttgtcaacaaaaatgattgttcaaataacactc 9753399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1079 - 1127
Target Start/End: Original strand, 10811268 - 10811316
Alignment:
Q  1079 taggttgtttcacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    ||||||||  || ||||||||||||||||| ||||||||||||||||||    
T  10811268 taggttgtcccaaaagttgtcaacaaaaatggttgttcaaataacactc 10811316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1083 - 1127
Target Start/End: Original strand, 13778569 - 13778613
Alignment:
Q  1083 ttgtttcacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||    
T  13778569 ttgtctcacaaattgtcaacaaaaatggttgttcaaataacactc 13778613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1095 - 1130
Target Start/End: Complemental strand, 27089895 - 27089860
Alignment:
Q  1095 ttgtcaacaaaaatagttgttcaaataacactcttc 1130  Q
    |||||||||||||| |||||||||||||||||||||    
T  27089895 ttgtcaacaaaaatggttgttcaaataacactcttc 27089860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 27471528 - 27471587
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||| |||||   |||||| |||||| |||||||||| ||||||||||    
T  27471528 ataatgcataatatgtacaggggttggggttcgaaccccggacaccccacttattcatct 27471587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 27817153 - 27817080
Alignment:
Q  250 ctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||     |||||||| ||| ||||||||| |||| ||| |||||| |||||||||||||||||||||    
T  27817153 ctcatttggtaaggg-----ataatgcacaatttgtgcaggggccggagttcgaaccc-ggacaccccatttattcatct 27817080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 33528293 - 33528217
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||     |||||||| ||| ||||||||| | |||||| ||||||  ||||||||| ||||||||||    
T  33528293 agctcatttggtaaggg-----ataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttattcatct 33528217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 39739281 - 39739357
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     |||| |||||||||||||   |||||| |||||| ||||||| || ||||||||||    
T  39739281 agctcatttggtaagggataa-----tgcacaatatgtgcagggattggggttcgaaccccggacacctcacttattcatct 39739357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 419719 - 419795
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||||||||||||||||     || | ||||||||||||| |||||||| |||||| |||||||||| ||||||||||    
T  419719 agctcatttggtaagggataa-----tgaacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatct 419795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1083 - 1127
Target Start/End: Original strand, 2144856 - 2144901
Alignment:
Q  1083 ttgtttcacaagttgtcaacaaaaa-tagttgttcaaataacactc 1127  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  2144856 ttgttccacaagttgtcaacaaaaattagttgttcaaataacactc 2144901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 11069433 - 11069370
Alignment:
Q  248 agctcatttggtaagggataaaataatgcataatatgtgcagggtccggggtttgaaccctggacaccc 316  Q
    ||||||||||||||||     ||||||||| ||||||||||||||  |||||| |||||||||||||||    
T  11069433 agctcatttggtaagg-----aataatgcacaatatgtgcagggtttggggttcgaaccctggacaccc 11069370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 23405227 - 23405279
Alignment:
Q  274 tgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
    |||||||||| |||||||  ||||||| ||||||||||||||||| |||||||    
T  23405227 tgcataatatatgcaggggtcggggttcgaaccctggacaccccacttattca 23405279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1079 - 1127
Target Start/End: Original strand, 38821497 - 38821545
Alignment:
Q  1079 taggttgtttcacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    ||||||||  || ||||||||||||||||| ||||||||||||||||||    
T  38821497 taggttgtcccaaaagttgtcaacaaaaattgttgttcaaataacactc 38821545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 17543161 - 17543102
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||||| ||||||||||||| |||| ||| |||| | |||||||||| ||||||||||    
T  17543161 ataatgcacaatatgtgcaggggccggagttcgaacgccggacaccccacttattcatct 17543102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1089 - 1127
Target Start/End: Original strand, 40443192 - 40443230
Alignment:
Q  1089 cacaagttgtcaacaaaaatagttgttcaaataacactc 1127  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  40443192 cacaagttatcaacaaaaatggttgttcaaataacactc 40443230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 18424221 - 18424164
Alignment:
Q  272 aatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcatct 329  Q
    |||||| ||||||||||||| |||||||| |||| | ||||| |||| ||||||||||    
T  18424221 aatgcacaatatgtgcaggggccggggttcgaactccggacatcccacttattcatct 18424164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 18949755 - 18949698
Alignment:
Q  270 ataatgcataatatgtgcagggtccggggtttgaaccctggacaccccatttattcat 327  Q
    ||||||||| ||||||||||||  ||||||| |||||||| |||||| | ||||||||    
T  18949755 ataatgcattatatgtgcaggggtcggggttcgaaccctgaacacccaacttattcat 18949698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1089 - 1126
Target Start/End: Original strand, 40504369 - 40504406
Alignment:
Q  1089 cacaagttgtcaacaaaaatagttgttcaaataacact 1126  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  40504369 cacaagttatcaacaaaaatggttgttcaaataacact 40504406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 33; Significance: 0.000000009; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1091 - 1131
Target Start/End: Original strand, 8984 - 9024
Alignment:
Q  1091 caagttgtcaacaaaaatagttgttcaaataacactcttca 1131  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  8984 caagttgtcaacaaatatatttgttcaaataacactcttca 9024  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 7115 - 7156
Alignment:
Q  285 tgcagggtccggggtttgaaccctggacaccccatttattca 326  Q
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T  7115 tgcaggggccggggttcgaaccccggacaccccatttattca 7156  T

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