View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_10 (Length: 757)

Name: NF8888_low_10
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_10
NF8888_low_10
[»] chr7 (8 HSPs)
chr7 (80-697)||(25026721-25027357)
chr7 (13-88)||(25031889-25031964)
chr7 (647-713)||(1706598-1706664)
chr7 (655-697)||(16706713-16706755)
chr7 (655-697)||(17680949-17680991)
chr7 (655-697)||(35016093-35016135)
chr7 (649-697)||(12287091-12287139)
chr7 (655-697)||(35015935-35015977)
[»] chr1 (12 HSPs)
chr1 (649-710)||(43728655-43728716)
chr1 (655-697)||(48379485-48379527)
chr1 (649-710)||(8259508-8259569)
chr1 (656-712)||(14624965-14625021)
chr1 (655-697)||(15342902-15342944)
chr1 (649-681)||(33016403-33016435)
chr1 (649-697)||(47024318-47024366)
chr1 (657-697)||(51776556-51776596)
chr1 (655-697)||(9694120-9694162)
chr1 (655-697)||(25389758-25389800)
chr1 (651-688)||(42693542-42693579)
chr1 (660-697)||(48941596-48941633)
[»] chr3 (4 HSPs)
chr3 (649-697)||(18090375-18090423)
chr3 (649-697)||(26952578-26952626)
chr3 (660-697)||(37333185-37333222)
chr3 (570-628)||(46940962-46941020)
[»] chr4 (11 HSPs)
chr4 (649-697)||(16529841-16529889)
chr4 (649-697)||(36755123-36755171)
chr4 (655-713)||(12832468-12832526)
chr4 (647-697)||(38476301-38476351)
chr4 (649-697)||(45549204-45549252)
chr4 (657-690)||(55693130-55693163)
chr4 (649-693)||(3534073-3534117)
chr4 (647-695)||(15024721-15024769)
chr4 (570-636)||(6866007-6866073)
chr4 (655-697)||(56192225-56192267)
chr4 (660-697)||(37996916-37996953)
[»] chr2 (5 HSPs)
chr2 (647-697)||(9032740-9032790)
chr2 (655-710)||(840329-840384)
chr2 (654-694)||(5732573-5732613)
chr2 (654-694)||(5803091-5803131)
chr2 (649-690)||(19494750-19494791)
[»] chr8 (3 HSPs)
chr8 (649-697)||(8845568-8845616)
chr8 (646-687)||(43417931-43417971)
chr8 (655-694)||(41407210-41407249)
[»] chr6 (6 HSPs)
chr6 (649-697)||(32183786-32183834)
chr6 (656-697)||(22746984-22747025)
chr6 (649-697)||(20969802-20969850)
chr6 (649-687)||(2912701-2912739)
chr6 (655-693)||(15135085-15135123)
chr6 (649-687)||(15489397-15489435)
[»] chr5 (6 HSPs)
chr5 (649-697)||(9622416-9622464)
chr5 (652-697)||(35377976-35378021)
chr5 (655-697)||(27903562-27903604)
chr5 (655-697)||(43100986-43101028)
chr5 (660-697)||(19279440-19279477)
chr5 (649-694)||(23418875-23418920)
[»] scaffold0355 (1 HSPs)
scaffold0355 (647-697)||(2796-2846)
[»] scaffold0001 (1 HSPs)
scaffold0001 (655-697)||(428296-428338)
[»] scaffold0009 (1 HSPs)
scaffold0009 (545-627)||(102967-103049)
[»] scaffold1940 (1 HSPs)
scaffold1940 (649-690)||(567-608)


Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 80 - 697
Target Start/End: Complemental strand, 25027357 - 25026721
Alignment:
Q  80 gccaacatattgagagttttgaacattttgggaattctgaattctcacttctcattcattttgaacaaaacaaagagtgaatcagcttgttgctacttca 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25027357 gccaacatattgagagttttgaacattttgggaattctgaattctcacttctcattcattttgaacaaaacaaag-gtgaatcagcttgttgctacttca 25027259  T
Q  180 accatgtgatccctataggtgatgagtaattatatgacagttagacttatgcatatgacaaaactaataatgaatatatggttataatagagtatattgt 279  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  25027258 accatgtgatccctataggtgatgag-acctatatgacagttagacttatgcatgtgacaaaagtaataatgaatatatggttataatagagtatattgt 25027160  T
Q  280 gaaatattctacaatcttgtgggatatggaaatggtcccacaatttcttggggagtaaaatgtagttttagttttcatttgaattcctaaatatttggtg 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25027159 gaaatattctacaatcttgtgggatatggaaatggtcccacaatttcttggggagtaaaatgtagttttagttttcatttgaattcctaaatatttggtg 25027060  T
Q  380 tattttgaataggtagtcagagtcactcttggatgtaatttgtaattgcaatttggaagtgtattccaacttgttaaattttaaagtggaataatt---- 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  25027059 tattttgaataggtagtcagagtcactcttggatgtaatttgtaattgcaatttggaagtgtattccaacttgttaaattttaaagtggaataattaaat 25026960  T
Q  476 -----------------aaatgatatatggctatcaatttggcctatcacttaacaaaatttaaacatttgttaaaataaaaaatctttatgaggattag 558  Q
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026959 aatcgatttcttctttaaaatgatatatggctatcaatttggcctatcacttaacaaaatttaaacatttgttaaaataaaaaatctttatgaggattag 25026860  T
Q  559 ttttgcaatctaaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatctttgatatgttcctttttataatggaggtg 658  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  25026859 ttttgcaatctaaaaagatctagcggcacaacttgttggttgtttatcttctattgacgtgtaagtaatctttgatatgttccttttcacaatggaggtg 25026760  T
Q  659 cctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
     ||||||||| |||||||||||| |||||||||||||||    
T  25026759 tctatttaatatggtgctaaataaatgaagcacccacca 25026721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 25031964 - 25031889
Alignment:
Q  13 cagagagggatgggactggaaccaatcagtacgtatttttggagggaagtgataatgtgataaccatgccaacata 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25031964 cagagagggatgggactggaaccaatcagtacgtatttttggagggaagtgataatgtgataaccatgccaacata 25031889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 647 - 713
Target Start/End: Original strand, 1706598 - 1706664
Alignment:
Q  647 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtcttaa 713  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||||| ||  |||||||||||    
T  1706598 ataatgggggtgcctatttaatgtggtgccgaatagatgaagcacccaccattgttaatggtcttaa 1706664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 16706713 - 16706755
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  16706713 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 16706755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 17680949 - 17680991
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  17680949 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 17680991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 35016093 - 35016135
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  35016093 ggtgcctatttaatatggtgctaaatagatgaagcacccacca 35016135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 697
Target Start/End: Complemental strand, 12287139 - 12287091
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  12287139 aatggaggtgcctatttaatgtggtgttaaataggtaaagcacccacca 12287091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 35015935 - 35015977
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||| |||||||||||||||||| |||||||||    
T  35015935 ggtgcctatttaatatggtgctaaatagatgaaacacccacca 35015977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 649 - 710
Target Start/End: Original strand, 43728655 - 43728716
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 710  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  43728655 aatggaggtgcctatttaatgtggtgctaaatagatgaagcatccaccattgtaaatggtct 43728716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 697
Target Start/End: Complemental strand, 48379527 - 48379485
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  48379527 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 48379485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 649 - 710
Target Start/End: Original strand, 8259508 - 8259569
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 710  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||| || | |||||||    
T  8259508 aatgggggtgcctatttaatatgatgctaaatagatgaagcacccaccattgtagatggtct 8259569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 712
Target Start/End: Complemental strand, 14625021 - 14624965
Alignment:
Q  656 gtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtctta 712  Q
    |||||| |||||||||||||||||||| |||||||||||||| || | |||||||||    
T  14625021 gtgcctctttaatgtggtgctaaataggtgaagcacccaccattgtagatggtctta 14624965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 15342902 - 15342944
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  15342902 ggtgcttatttaatgtggtgctaaataggtgaagcacccacca 15342944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 681
Target Start/End: Complemental strand, 33016435 - 33016403
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaata 681  Q
    |||||||||||||||||||||||||||||||||    
T  33016435 aatggaggtgcctatttaatgtggtgctaaata 33016403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 697
Target Start/End: Complemental strand, 47024366 - 47024318
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||||||    
T  47024366 aatggaggtgcctatttaatgtggtgtgaaatagattacgcacccacca 47024318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 657 - 697
Target Start/End: Complemental strand, 51776596 - 51776556
Alignment:
Q  657 tgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  51776596 tgcctatttaatgtggtgctaaataggtgaaacacccacca 51776556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 9694120 - 9694162
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||| | ||||||||||||| ||||||||||||||    
T  9694120 ggtgcctatttagtatggtgctaaataggtgaagcacccacca 9694162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 25389758 - 25389800
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||| ||||||||||||||||||||||| | ||||||||||||    
T  25389758 ggtgtctatttaatgtggtgctaaataggttaagcacccacca 25389800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 688
Target Start/End: Original strand, 42693542 - 42693579
Alignment:
Q  651 tggaggtgcctatttaatgtggtgctaaatagatgaag 688  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  42693542 tggaggtgcctatttaatatggtgctaaataaatgaag 42693579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 48941596 - 48941633
Alignment:
Q  660 ctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  48941596 ctatttaatatggtgctaaatagatgaaacacccacca 48941633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 649 - 697
Target Start/End: Complemental strand, 18090423 - 18090375
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18090423 aatggaggtgcctatttaatgtggtgctaaatagatgaagcatccacca 18090375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 697
Target Start/End: Original strand, 26952578 - 26952626
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  26952578 aatggaggtgtctatttaatatggtgctaaataggtgaagcacccacca 26952626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 37333222 - 37333185
Alignment:
Q  660 ctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37333222 ctatttaatgtggtgctaaataggtgaagcacccacca 37333185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 628
Target Start/End: Original strand, 46940962 - 46941020
Alignment:
Q  570 aaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatc 628  Q
    ||||||| |||||||  ||||||||||| ||||||||||||||| | |||||| |||||    
T  46940962 aaaaagacctagcggtgcaacttgttgcctgtttaccttctattcatgtgtaattaatc 46941020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 649 - 697
Target Start/End: Complemental strand, 16529889 - 16529841
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  16529889 aatgggggtgcctatttaatgtggtgctaaataggtgaagcacccacca 16529841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 649 - 697
Target Start/End: Complemental strand, 36755171 - 36755123
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  36755171 aatggaggtgtctatttaatatggtgctaaatagatgaagcacccacca 36755123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 713
Target Start/End: Original strand, 12832468 - 12832526
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtcttaa 713  Q
    |||||| ||||||||||||||||||||| |||||||||||||| || | ||||||||||    
T  12832468 ggtgccgatttaatgtggtgctaaataggtgaagcacccaccattgtagatggtcttaa 12832526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 647 - 697
Target Start/End: Original strand, 38476301 - 38476351
Alignment:
Q  647 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  38476301 ataatgggggtgtctatttaatgtggtgctaaataggtgaagcacccacca 38476351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 697
Target Start/End: Original strand, 45549204 - 45549252
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  45549204 aatggaggtgtctatttaatgtggtgctaaataggtgaaacacccacca 45549252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 690
Target Start/End: Original strand, 55693130 - 55693163
Alignment:
Q  657 tgcctatttaatgtggtgctaaatagatgaagca 690  Q
    ||||||||||||||||||||||||||||||||||    
T  55693130 tgcctatttaatgtggtgctaaatagatgaagca 55693163  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 693
Target Start/End: Original strand, 3534073 - 3534117
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcaccc 693  Q
    ||||| ||||||||||||||||| |||||||||| ||||||||||    
T  3534073 aatgggggtgcctatttaatgtgatgctaaataggtgaagcaccc 3534117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 647 - 695
Target Start/End: Original strand, 15024721 - 15024769
Alignment:
Q  647 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccac 695  Q
    |||||||||||||||||||||| || |||||||||| ||||||| ||||    
T  15024721 ataatggaggtgcctatttaatatgatgctaaataggtgaagcatccac 15024769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 636
Target Start/End: Original strand, 6866007 - 6866073
Alignment:
Q  570 aaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatctttgatat 636  Q
    |||||| ||||||| ||||||||||||  | |||| |||||||| | |||||||||||| |||||||    
T  6866007 aaaaaggtctagcgacacaacttgttgtctttttatcttctattcatgtgtaagtaatcattgatat 6866073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 697
Target Start/End: Complemental strand, 56192267 - 56192225
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||||||| ||||||| | ||||||||||||    
T  56192267 ggtgcctatttaatgtggtgttaaataggtaaagcacccacca 56192225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 37996953 - 37996916
Alignment:
Q  660 ctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  37996953 ctatttaatgtggtgctaaatagaagaagcatccacca 37996916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 647 - 697
Target Start/End: Original strand, 9032740 - 9032790
Alignment:
Q  647 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  9032740 ataatagaggtgcctatttaatgtggtgttaaataggtgaagcacccacca 9032790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 655 - 710
Target Start/End: Original strand, 840329 - 840384
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 710  Q
    |||||||||||||||||||||||| ||| |||||||||||||| ||  ||||||||    
T  840329 ggtgcctatttaatgtggtgctaagtaggtgaagcacccaccattgtgaatggtct 840384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 694
Target Start/End: Complemental strand, 5732613 - 5732573
Alignment:
Q  654 aggtgcctatttaatgtggtgctaaatagatgaagcaccca 694  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5732613 aggtgcctatttaatgtggtgctaaataggttaagcaccca 5732573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 694
Target Start/End: Complemental strand, 5803131 - 5803091
Alignment:
Q  654 aggtgcctatttaatgtggtgctaaatagatgaagcaccca 694  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5803131 aggtgcctatttaatgtggtgctaaataggttaagcaccca 5803091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 690
Target Start/End: Complemental strand, 19494791 - 19494750
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagca 690  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  19494791 aatgggggtgcctatttaatatggtactaaatagatgaagca 19494750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 697
Target Start/End: Complemental strand, 8845616 - 8845568
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  8845616 aatggaagtgcctatttaatgtggtgctaaataggtaaagcacccacca 8845568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 687
Target Start/End: Original strand, 43417931 - 43417971
Alignment:
Q  646 tataatggaggtgcctatttaatgtggtgctaaatagatgaa 687  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  43417931 tataatggag-tgcctatttaatgtggtgctaaatagatgaa 43417971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 694
Target Start/End: Complemental strand, 41407249 - 41407210
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcaccca 694  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  41407249 ggtgcctatttaatatggtgttaaatagatgaagcaccca 41407210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 697
Target Start/End: Complemental strand, 32183834 - 32183786
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||||    
T  32183834 aatgggggtgcctatttaatatgatgctaaatagatgaagcacccacca 32183786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 697
Target Start/End: Complemental strand, 22747025 - 22746984
Alignment:
Q  656 gtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  22747025 gtgcctatttaatatagtgctaaatagatgaagcacccacca 22746984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 697
Target Start/End: Original strand, 20969802 - 20969850
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||| |||||||| ||||||||||||||||||| ||||| ||||||||    
T  20969802 aatgggggtgcctacttaatgtggtgctaaataggtgaagtacccacca 20969850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 687
Target Start/End: Complemental strand, 2912739 - 2912701
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaa 687  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  2912739 aatggaggtgcctatttaatgtggttctaaataggtgaa 2912701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 693
Target Start/End: Original strand, 15135085 - 15135123
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcaccc 693  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  15135085 ggtgcctatttaatgtggtgctaaataggtgaagtaccc 15135123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 687
Target Start/End: Complemental strand, 15489435 - 15489397
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaa 687  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  15489435 aatgggggtgcctatttaatgtggtgctaaataggtgaa 15489397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 697
Target Start/End: Original strand, 9622416 - 9622464
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  9622416 aatgggggtgtctatttaatgtggtgctaaataggtgaagcacccacca 9622464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 697
Target Start/End: Original strand, 35377976 - 35378021
Alignment:
Q  652 ggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||||||||||||||| || || ||||||||||||||||||||||    
T  35377976 ggaggtgcctatttaatatgatgttaaatagatgaagcacccacca 35378021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 697
Target Start/End: Complemental strand, 27903604 - 27903562
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||||| ||||||||||| |||| |||||||||    
T  27903604 ggtgcctatttaatgtagtgctaaataggtgaaacacccacca 27903562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 697
Target Start/End: Original strand, 43100986 - 43101028
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    ||||| |||||||||||||||||||||| | ||||||||||||    
T  43100986 ggtgcttatttaatgtggtgctaaataggttaagcacccacca 43101028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 19279477 - 19279440
Alignment:
Q  660 ctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  19279477 ctatttaatgtgatgctaaataggtgaagcacccacca 19279440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 694
Target Start/End: Complemental strand, 23418920 - 23418875
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagcaccca 694  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||    
T  23418920 aatgggggtgcctatttaatacggtgttaaatagatgaagcaccca 23418875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 697
Target Start/End: Original strand, 2796 - 2846
Alignment:
Q  647 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||| ||||||||||||| ||||||||||||| |||| |||||||||    
T  2796 ataatggaagtgcctatttaatatggtgctaaataggtgaaacacccacca 2846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 697
Target Start/End: Complemental strand, 428338 - 428296
Alignment:
Q  655 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 697  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  428338 ggtgcctatttaatctggtgctaaataggtgaagcacccacca 428296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 627
Target Start/End: Complemental strand, 103049 - 102967
Alignment:
Q  545 tttatgaggattagttttgcaatctaaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaat 627  Q
    |||| ||||||| ||||||| ||| |||||| ||||||||| |||||||||||  | || ||||||||| | |||||| ||||    
T  103049 tttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat 102967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 690
Target Start/End: Complemental strand, 608 - 567
Alignment:
Q  649 aatggaggtgcctatttaatgtggtgctaaatagatgaagca 690  Q
    ||||| |||||||||||||||||||| ||||||| |||||||    
T  608 aatgggggtgcctatttaatgtggtgttaaataggtgaagca 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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