View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_102 (Length: 253)
Name: NF8888_low_102
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 17032085 - 17032341
Alignment:
| Q |
1 |
ctctaagagacaatcaacaaaaagtttatcagcta--gatctacttcactagcttgttggctaaataatgcatagctatattgttctatatatagtaaag |
98 |
Q |
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| T |
17032085 |
ctctaagagacaatcaacaaaaagtttatgagctatagatctacttcactagcttgttggctaaataatgcatagctatattgttctatatatagtaaag |
17032184 |
T |
|
| Q |
99 |
atatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctat-------caatgaacatagtcaggatgtttggcc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |
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| T |
17032185 |
atatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttggcc |
17032284 |
T |
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| Q |
192 |
ataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtccat |
248 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17032285 |
ataggaattgggaatatcattctacgaaaccaaatatattcttcttgtgatgtccat |
17032341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 54 - 246
Target Start/End: Original strand, 17048544 - 17048742
Alignment:
| Q |
54 |
gttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagt |
153 |
Q |
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||||||||||| |||||||| |||| |||||||||||||||| | |||| | |||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
17048544 |
gttggctaaatgatgcatag-tataatgttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagt |
17048642 |
T |
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| Q |
154 |
tagtttgctatca-------atgaacatagtcaggatgtttggccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
246 |
Q |
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| T |
17048643 |
tagtctactatcattgaacaatgaacatagtcaggatgtttggcaataggaattgggaatatcattatatgaaatcaaatatattcttcttgtgatgtcc |
17048742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 17042678 - 17042875
Alignment:
| Q |
54 |
gttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagt |
153 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| | |||| | |||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
17042678 |
gttggctaaataatgcatag-tataatgttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagt |
17042776 |
T |
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| Q |
154 |
tagtttgctatc-------aatgaacatagtcaggatgtttggccataggaattgggaatatcattctacgaaatca---aatatattcttcttgtgat |
242 |
Q |
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|||| | ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||| |
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| T |
17042777 |
tagtctactatcattgaaaaatgaacatagtcaggatgtttggcaataggaattgggaatatcattatatgaaatcaaataatatattcttcttgtgat |
17042875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 17036795 - 17037062
Alignment:
| Q |
1 |
ctctaagagacaatcaacaaaaagtttatcagctagatctacttcactagcttg-----ttggctaaataatgcatagctatattgttctatatatagta |
95 |
Q |
| |
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|||||||| ||||||||||||||| | || |||||||||| | ||||| ||| ||||||||||||||||||| |||| |||||||||||||||| |
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| T |
17036795 |
ctctaagaaacaatcaacaaaaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatag-tataatgttctatatatagta |
17036893 |
T |
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| Q |
96 |
aagatatcgtgttcaaagtacaaatatatgt------gaaaatttgtgtggccatttataaagttagtttgctatca-------atgaacatagtcagga |
182 |
Q |
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| |||| | |||||||| ||||| |||| | |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
17036894 |
caaatattgggttcaaagcacaaagatatatatacttgaaaatttttgtggccatttataaagttagtcagctatcattgaaaaatgaacatagtcagga |
17036993 |
T |
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| Q |
183 |
tgtttggccataggaattgggaatatcattctacgaaatca---aatatattcttcttgtgatgtccat |
248 |
Q |
| |
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|||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| |
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| T |
17036994 |
tgtttggcaataggaattgggaatatcattatatgaaatcaaataatatattcttcttgtgatgtccat |
17037062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 16994734 - 16994987
Alignment:
| Q |
1 |
ctctaagagacaatcaacaaaaagtttatcagctagatctacttcactagcttg-----ttggctaaataatgcatagctatattgttctatatatagta |
95 |
Q |
| |
|
||||||||||||||||||| |||| | || |||||||||| | ||||| ||| ||||||||||||||||||| |||| ||||||||||||| || |
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| T |
16994734 |
ctctaagagacaatcaacataaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatag-tataatgttctatatatatta |
16994832 |
T |
|
| Q |
96 |
aagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctat-------caatgaacatagtcaggatgtttg |
188 |
Q |
| |
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| |||| | |||||||| ||||| ||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |
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| T |
16994833 |
caaatattgggttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttg |
16994932 |
T |
|
| Q |
189 |
gccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
246 |
Q |
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|| | ||||||| || |||| || || |||||||||||||||||||||||||||||| |
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| T |
16994933 |
gcaaaaggaatt-ggtatattat--tatgaaatcaaatatattcttcttgtgatgtcc |
16994987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 17017969 - 17018222
Alignment:
| Q |
1 |
ctctaagagacaatcaacaaaaagtttatcagctagatctacttcactagcttg-----ttggctaaataatgcatagctatattgttctatatatagta |
95 |
Q |
| |
|
||||||||||||||||||| |||| | || |||||||||| | ||||| ||| ||||||||||||||||||| |||| ||||||||||||| || |
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| T |
17017969 |
ctctaagagacaatcaacataaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatag-tataatgttctatatatatta |
17018067 |
T |
|
| Q |
96 |
aagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctat-------caatgaacatagtcaggatgtttg |
188 |
Q |
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| |||| | |||||||| ||||| ||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |
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| T |
17018068 |
caaatattgggttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttg |
17018167 |
T |
|
| Q |
189 |
gccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
246 |
Q |
| |
|
|| | ||||||| || |||| || || |||||||||||||||||||||||||||||| |
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|
| T |
17018168 |
gcaaaaggaatt-ggtatattat--tatgaaatcaaatatattcttcttgtgatgtcc |
17018222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 16988137 - 16988218
Alignment:
| Q |
85 |
tatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca |
166 |
Q |
| |
|
||||||||||| | |||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||| |||| |
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| T |
16988137 |
tatatatagtacatatattgtgttcaaagtacaaatatacgtgtaaatttgtgtggccatgtataaagtttgtttgcaatca |
16988218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 17017288 - 17017365
Alignment:
| Q |
84 |
ctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgc |
161 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | | ||||||||| |||||| |
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| T |
17017288 |
ctatatatagtacagatattgtgttcaaagtacaaatatacgtgaaaatttgtgtggtcttgtataaagtttgtttgc |
17017365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17002755 - 17002808
Alignment:
| Q |
1 |
ctctaagagacaatcaacaaaaagtttatcagctagatctacttcactagcttg |
54 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||||||||||||||||||| |
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|
| T |
17002755 |
ctctaagagacaatcaacataaagctaatcagctagatctacttcactagcttg |
17002808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 17025148 - 17025249
Alignment:
| Q |
1 |
ctctaagagacaatcaacaaaaagtttatcagctagatctacttca--ctagcttg-----ttggctaaataatgcatagctatattgttctatatatag |
93 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||| || || |||||||| |||| |||||||||||||| |
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| T |
17025148 |
ctctaagagacaatcaacaaaaagcttatcagctagatctgattcatgctagcttgctgccttggttatattatgcataggtataatgttctatatatag |
17025247 |
T |
|
| Q |
94 |
ta |
95 |
Q |
| |
|
|| |
|
|
| T |
17025248 |
ta |
17025249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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