View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_103 (Length: 250)
Name: NF8888_low_103
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_103 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11495718 - 11495955
Alignment:
| Q |
1 |
aaatttcaaggtttgtggtagaccgtctgtagggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaat |
100 |
Q |
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| T |
11495718 |
aaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactgtcgaagagaatagagagggagcatcaat |
11495817 |
T |
|
| Q |
101 |
tggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaactcaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11495818 |
tggctgataacatgtgagaatggaattatcattatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaactcaagtt |
11495917 |
T |
|
| Q |
201 |
cagttaaggaaggaagttggtcaggtatgtctcctctc |
238 |
Q |
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| T |
11495918 |
cagttaaggaaggaagattgtcaggtatgtctcctctc |
11495955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 7489294 - 7489418
Alignment:
| Q |
1 |
aaatttcaaggtttgtggtagaccgtctgtagggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaat |
100 |
Q |
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|||||||||| ||| |||||||| |||||| | ||||||||||||| |||||||| | |||||||| |||| ||||||||||| |||||||| ||||||| |
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| T |
7489294 |
aaatttcaagatttttggtagacagtctgttgagaaagacgttagagatggaaagccgtctatggtcaactgtcgaagagaattgagagggaacatcaat |
7489393 |
T |
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| Q |
101 |
tggctgataacatgtgagaatggaa |
125 |
Q |
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| T |
7489394 |
tggttgaatacatctgacaatggaa |
7489418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2921506 - 2921424
Alignment:
| Q |
1 |
aaatttcaaggtttgtggtagaccgtctgtagggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaat |
83 |
Q |
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|||||||||||||| ||||||| ||||| |||| |||||| ||| |||| ||| | |||||||| |||| ||||||||||| |
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| T |
2921506 |
aaatttcaaggttttccgtagaccatctgttgggagagacgtcagagatgggaagccttctatggtcaactgtcgaagagaat |
2921424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 17313750 - 17313513
Alignment:
| Q |
1 |
aaatttcaaggtttgtggtagaccgtctgtagggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaat |
100 |
Q |
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|||||||||||||| ||||| ||| ||||| ||||||||||| |||||||||||||| | |||||| |||| | |||||||||||||||||||||||| | |
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| T |
17313750 |
aaatttcaaggtttttggtaaaccatctgttgggaaagacgtcagaaatggaaagtcgtatatggtcaactgtagaagagaatagagagggagcatcagt |
17313651 |
T |
|
| Q |
101 |
tggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaactcaagtt |
200 |
Q |
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|||||||| ||||| ||||| |||||||| || ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
17313650 |
tggctgattacatgagagaacggaattatagttatgaaattgctattatcatctgaatgtcttgactccaccagcaaaggatatcctcttaactcaagtt |
17313551 |
T |
|
| Q |
201 |
cagttaaggaaggaagttggtcaggtatgtctcctctc |
238 |
Q |
| |
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| T |
17313550 |
cagttaaggaaggaagtttgtcaggtatgtctcctctc |
17313513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 18390032 - 18389929
Alignment:
| Q |
4 |
tttcaaggtttgtggtagaccgtctgtagggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaattgg |
103 |
Q |
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||||||||||| ||||||||| ||||||||||||||| ||||| || |||| | ||||||||||| | ||||||||||| |||||| |||||||||||| |
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| T |
18390032 |
tttcaaggtttttggtagaccttctgtagggaaagacattagagattgaaaaccgtctatggtaaattgtcgaagagaattgagaggaagcatcaattgg |
18389933 |
T |
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| Q |
104 |
ctga |
107 |
Q |
| |
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|||| |
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| T |
18389932 |
ctga |
18389929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 5990352 - 5990323
Alignment:
| Q |
186 |
ctcttaactcaagttcagttaaggaaggaa |
215 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5990352 |
ctcttaactcaagttcagttaaggaaggaa |
5990323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5990504 - 5990468
Alignment:
| Q |
1 |
aaatttcaaggtttgtggtagaccgtctgtagggaaa |
37 |
Q |
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|||||||||||||| ||||||||||||||| |||||| |
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| T |
5990504 |
aaatttcaaggtttttggtagaccgtctgttgggaaa |
5990468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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