View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8888_low_106 (Length: 248)
Name: NF8888_low_106
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8888_low_106 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 6957458 - 6957243
Alignment:
| Q |
18 |
ttggattctttattatatgtatatttgtttgtataaagcttgaaagaaatgcaactacctgacatctccctttgccattcttgacaaagcaaaatggatc |
117 |
Q |
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| T |
6957458 |
ttggattctttattatatgtatatttgtttgtataaagcttgaaagaaatgcaactacctgacatctccctttgccattcttgacaaagcaaaatggatc |
6957359 |
T |
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| Q |
118 |
tgttagtccttgttgaatatgaccactatgcacaccacctttcttaagattgaatttaggaactttaaggccatcaaataagggattggagccatcagat |
217 |
Q |
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| T |
6957358 |
tgttagtccttgttgaatatgaccactatgcacaccacctttcttaagattgaatttaggaactttaaggccatcaaataagggattggagccatcagat |
6957259 |
T |
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| Q |
218 |
ataccataaggtttgt |
233 |
Q |
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|||||||||||||||| |
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| T |
6957258 |
ataccataaggtttgt |
6957243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 49102793 - 49102955
Alignment:
| Q |
69 |
caactacctgacatctccctttgccattcttgacaaagcaaaatggatctgttagtccttgttgaatatgaccactatgcacaccacctttcttaagatt |
168 |
Q |
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| T |
49102793 |
caactacctgacattttcctttgccgttcttcacaaagcaataaggatctctgagtccttgttgaatatgaccactaaggacaccacctttttcaagatt |
49102892 |
T |
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| Q |
169 |
gaatttaggaactttaaggccatcaaataagggattggagccatcagatataccataaggttt |
231 |
Q |
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| T |
49102893 |
gaacttaggaacttttaggccattaaataatggattggagccatctgatatcccatatggttt |
49102955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 49114831 - 49114993
Alignment:
| Q |
69 |
caactacctgacatctccctttgccattcttgacaaagcaaaatggatctgttagtccttgttgaatatgaccactatgcacaccacctttcttaagatt |
168 |
Q |
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|||||||||||||| | ||||||||||||| ||| ||||||| |||||| | |||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
49114831 |
caactacctgacattttcctttgccattctcgacgaagcaaagaggatctctgagtccttgttgaatatgaccactatggacaccacctttttcaagatt |
49114930 |
T |
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| Q |
169 |
gaatttaggaactttaaggccatcaaataagggattggagccatcagatataccataaggttt |
231 |
Q |
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||| || |||||||| ||||||| |||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
49114931 |
gaacttgggaacttttaggccattaaataatggattggaaccatcagatattccatatggttt |
49114993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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