View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8888_low_11 (Length: 700)

Name: NF8888_low_11
Description: NF8888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8888_low_11
NF8888_low_11
[»] chr7 (1 HSPs)
chr7 (87-683)||(4488186-4488783)
[»] chr3 (4 HSPs)
chr3 (185-589)||(1409606-1410011)
chr3 (87-146)||(1409549-1409608)
chr3 (249-313)||(1402810-1402874)
chr3 (625-681)||(1410015-1410071)
[»] chr8 (2 HSPs)
chr8 (380-605)||(22621884-22622110)
chr8 (625-683)||(22622131-22622186)
[»] chr5 (2 HSPs)
chr5 (87-211)||(19023787-19023911)
chr5 (236-309)||(11955361-11955434)
[»] chr4 (3 HSPs)
chr4 (87-146)||(14244855-14244914)
chr4 (524-589)||(14244918-14244983)
chr4 (625-681)||(14244987-14245044)
[»] chr2 (3 HSPs)
chr2 (87-146)||(6355405-6355464)
chr2 (524-589)||(6355468-6355533)
chr2 (625-681)||(6355537-6355594)
[»] chr1 (1 HSPs)
chr1 (210-309)||(40682223-40682322)


Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 87 - 683
Target Start/End: Original strand, 4488186 - 4488783
Alignment:
Q  87 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 186  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488186 tatttgaggaagaatccagtttgattttagcactattggtgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 4488285  T
Q  187 taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgatt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4488286 taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcatcacttcctctgccactgcagatgccacatcatctgatt 4488385  T
Q  287 caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488386 caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat 4488485  T
Q  387 atcttacctttctctgctcacacattttc-taaaaagtagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaacatcgtcaca 485  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  4488486 atcttacctttctctgctcacacattttcttaaaaggtagaaacatttgatttgtctccaactctatttcctttttgtatgtagctgcaacatcatcaca 4488585  T
Q  486 cacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggctatatcat 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488586 cacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggctatatcat 4488685  T
Q  586 aacagctatagtcacttcttnnnnnnnnnnnnnnnntatagctatagtcacttatgtataataaaatcatttgttatatgaaaaatattagagttagc 683  Q
    ||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488686 aacagctatagtcacttcttgaaaaagaaataaaaatatagctatagtcacttatgtataataaaatcatttgttatatgaaaaatattagagttagc 4488783  T

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Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 185 - 589
Target Start/End: Original strand, 1409606 - 1410011
Alignment:
Q  185 agtaccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctga 284  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  1409606 agtaccttttaaataagccaccggttgaagctccaacgaccaatttcgttacagcatacttggttacttcctctgccaccgcagatgccacatcatctga 1409705  T
Q  285 ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaaca 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1409706 ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatcttcatgaagaaca 1409805  T
Q  385 atatcttacctttctctgctcacacattttc-taaaaagtagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaacatcgtca 483  Q
    ||||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||  |||||||||| |||||||||| |||||| |||||||||    
T  1409806 atatcttacctttctctgctcacacatttgcttaaaaggtagaagcatttgatttgtctcacactctatttcttttttgtacgcagctgctacatcgtca 1409905  T
Q  484 cacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggctatatc 583  Q
    | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||    
T  1409906 cgcacttgtgaaattgggagcatatttcccactgcaagtacaaaaatgttgaattatcataacgaaataataatcttgtaaaatcttccattgctatatc 1410005  T
Q  584 ataaca 589  Q
    ||||||    
T  1410006 ataaca 1410011  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 1409549 - 1409608
Alignment:
Q  87 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 146  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  1409549 tatttgaggaagaatgcagtttgatcttagaactattggtgataataaatctttattagt 1409608  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 1402810 - 1402874
Alignment:
Q  249 tacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgcacct 313  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||| || |||||||||||||    
T  1402810 tacttcctctgctactgcagttgctacatcatctgattcaatcactactacatctacatgcacct 1402874  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 625 - 681
Target Start/End: Original strand, 1410015 - 1410071
Alignment:
Q  625 agctatagtcacttatgtataataaaatcatttgttatatgaaaaatattagagtta 681  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  1410015 agctatagtcacttacctataataaaatcatttgttatatggaaaatattagagtta 1410071  T

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Target: chr8 (Bit Score: 175; Significance: 7e-94; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 380 - 605
Target Start/End: Original strand, 22621884 - 22622110
Alignment:
Q  380 gaacaatatcttacctttctctgctcacacattttctaaaaag-tagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaacat 478  Q
    |||||||||||||||||||| ||||||||||||| || ||||| ||||| ||||||||||| |||| |||||||||||||||| |||| |||||||||||    
T  22621884 gaacaatatcttacctttctatgctcacacatttacttaaaaggtagaagcatttgatttgcctcccactctatttcctttttttacgcagctgcaacat 22621983  T
Q  479 cgtcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggct 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22621984 cgtcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccactgct 22622083  T
Q  579 atatcataacagctatagtcacttctt 605  Q
    |||| |||||| |||||||||||||||    
T  22622084 atatgataacaactatagtcacttctt 22622110  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 625 - 683
Target Start/End: Original strand, 22622131 - 22622186
Alignment:
Q  625 agctatagtcacttatgtataataaaatcatttgttatatgaaaaatattagagttagc 683  Q
    |||||||||||||||||| ||||||||||||   ||||||| |||||||||||||||||    
T  22622131 agctatagtcacttatgtgtaataaaatcat---ttatatggaaaatattagagttagc 22622186  T

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Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 19023787 - 19023911
Alignment:
Q  87 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag 186  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19023787 tatttgaggatgaatccagtttgatcttggcactattggtgataataaatcattattagtcaaggtagatgctaaaatgattttgctgtcattatagaag 19023886  T
Q  187 taccttttaaataagccacccattg 211  Q
    |||||||||||||||||||||||||    
T  19023887 taccttttaaataagccacccattg 19023911  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 309
Target Start/End: Original strand, 11955361 - 11955434
Alignment:
Q  236 tagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc 309  Q
    |||||| ||| | |||||||||||| | ||||| ||| ||||||||| |||||||||||| ||  |||||||||    
T  11955361 tagcatccttaactacttcctctgctattgcagttgctacatcatcttattcaatcactaaaatatctacatgc 11955434  T

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Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 14244855 - 14244914
Alignment:
Q  87 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 146  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14244855 tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt 14244914  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 524 - 589
Target Start/End: Original strand, 14244918 - 14244983
Alignment:
Q  524 caaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggctatatcataaca 589  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  14244918 caaaaatgttgaattatcataactaaaaattaatcttgtaaaatcttccactgctgtatcataaca 14244983  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 681
Target Start/End: Original strand, 14244987 - 14245044
Alignment:
Q  625 agctatagtcacttatgtataataaaatca-tttgttatatgaaaaatattagagtta 681  Q
    |||||||||||||||||||||||||  | | ||||||||||| ||||||||| |||||    
T  14244987 agctatagtcacttatgtataataagttaattttgttatatggaaaatattatagtta 14245044  T

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Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 6355405 - 6355464
Alignment:
Q  87 tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt 146  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6355405 tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt 6355464  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 524 - 589
Target Start/End: Original strand, 6355468 - 6355533
Alignment:
Q  524 caaaaatgttgaattatcataactaaaaaataatcttgtaaaatcttccacggctatatcataaca 589  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||||||    
T  6355468 caaaaatgttgaattatcataactaaaaattaatctagtaaaatcttccactgctgtatcataaca 6355533  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 681
Target Start/End: Original strand, 6355537 - 6355594
Alignment:
Q  625 agctatagtcacttatgtataataaaatca-tttgttatatgaaaaatattagagtta 681  Q
    |||||||||||||||||||||||||| | | ||||||||||| ||||||||| |||||    
T  6355537 agctatagtcacttatgtataataaattaattttgttatatggaaaatattatagtta 6355594  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 40682322 - 40682223
Alignment:
Q  210 tgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc 309  Q
    ||||||||||| ||| | ||| |||||||||| |||   |||||||||||| | ||||  ||| |||||||||||||||||||||| ||| |||||||||    
T  40682322 tgaagctccaaggacaagtttggttatagcatccttagctacttcctctgctattgcaattgctacatcatctgattcaatcactaaaacatctacatgc 40682223  T

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